PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000108G1000
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 420aa    MW: 47101.8 Da    PI: 9.1442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000108G1000genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001487107323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++C+ksF+++++L  H+++H
  PH01000108G1000  87 CKHCKKSFPSSMSLGGHMNLH 107
                      *******************99 PP
2zf-C2H211.30.0011161182223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ C k+F + + L  H++ H
  PH01000108G1000 161 ECQLCFKVFASCHALSMHMKAH 182
                      6*******************98 PP
3zf-C2H212.90.00033327349123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k+F++   L  H++ H
  PH01000108G1000 327 HECKLCDKVFTSGQALGGHMKGH 349
                      78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-584111No hitNo description
PfamPF139123.5E-585109IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.90785112IPR007087Zinc finger, C2H2
SMARTSM003556.185107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
PfamPF139120.014160182IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951160187IPR007087Zinc finger, C2H2
SMARTSM003553.5160182IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.53E-7161182No hitNo description
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7322349No hitNo description
PfamPF139123.4E-10327349IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702327354IPR007087Zinc finger, C2H2
SMARTSM003550.026327349IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280329349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MELSFNEKGF AQIPFPPPKK EPFFALKEWS DGTNFLRKYI KVSRFSNPCV ASQFLLAYLL  60
RSSSYVRSYF SSCYASDMPP RGTKHWCKHC KKSFPSSMSL GGHMNLHRGR RKKQPRSTPN  120
PPSVGAGSGR YGLRERRQRT WWLSDSTSSD DEPWTLVPKT ECQLCFKVFA SCHALSMHMK  180
AHAQKEKKTV VEHKASGKVA AWSNGNGDCN VTVSAAPGKK KRSRRMILDT VPTPVMMTYG  240
IEEVDAACIL LKLSGDLNKY SASVDCNEDC EMDGNLAYHI QMTEMDLTSS DRGLIWETEL  300
IKPENSSSDE EMKFVSLSHV LKATTSHECK LCDKVFTSGQ ALGGHMKGHS YPDHETVATF  360
PKSAVTQPRK QLLEVDQQSL NLCLPALSDR DYSSSRRKSE MNPWWVASSL RGERMLGVI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000108G1000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232783.11e-134uncharacterized protein LOC104582938
TrEMBLI1GQD71e-132I1GQD7_BRADI; Uncharacterized protein
STRINGBRADI1G14950.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-07C2H2-like zinc finger protein