PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000104G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 193aa    MW: 21032.2 Da    PI: 9.3014
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000104G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.72.4e-1376126151
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                      e+el+r rr+ +NRe+ArrsR RK+ ++ eL   v+ L + N++L +el++
  PH01000104G0480  76 EEELRRRRRMVSNRESARRSRMRKQRQLSELWAQVAHLRGANRRLLDELNR 126
                      799********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.4E-974126No hitNo description
SMARTSM003386.5E-1276147IPR004827Basic-leucine zipper domain
PfamPF001701.3E-1076126IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.16278148IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-1180127No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
CDDcd147021.94E-1285129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MALPAQAYFP RSFEPSATFQ EAAVSALLAG GDAAAVFEFE PILEETAHLS SGNGSPSSRS  60
DAGGGYYQPT EAAAAEEELR RRRRMVSNRE SARRSRMRKQ RQLSELWAQV AHLRGANRRL  120
LDELNRTLRG CGGARRENAR LRDEKAELTK KLEQLLQTAP QRNTSSSTSS DHSSCSSEPC  180
KNSTTTTASA TE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000104G0480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043761e-87AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBankAP0045571e-87AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149641e-87AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-87CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8315041e-87CT831504.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148525.13e-58basic leucine zipper 25-like
TrEMBLA0A3L6PRK22e-59A0A3L6PRK2_PANMI; G-box-binding factor 1
STRINGORUFI08G08020.14e-56(Oryza rufipogon)
STRINGOS08T0487100-014e-56(Oryza sativa)
STRINGONIVA08G20730.14e-56(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.14e-12basic leucine-zipper 42