PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000095G1840
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 306aa    MW: 32684.3 Da    PI: 5.1783
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000095G1840genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.68.8e-16134189361
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      ++kr rr+ +NRe+ArrsR+RK+a +  Le  v++L +e  +L    ++l++ +++l++
  PH01000095G1840 134 DVKRMRRMVSNRESARRSRKRKQAHLVDLESQVDNLRGEHASLF---KQLTDSSQQLTT 189
                      579*************************************9998...777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-16132196IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.542134187IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-12135187No hitNo description
PfamPF001705.7E-13135187IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-12136188No hitNo description
CDDcd147024.18E-19137187No hitNo description
PROSITE patternPS000360139154IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGREDA ADQKPGHGGL HAPFGVFSAA DLSGFCFADS NALNGSIHNH  60
QWPQSQNLSA LHPALSTTIE SQSSICAAAS PTSATNLNMK ESQALGGSSG SDSDSESLLD  120
TEGSPCEQST NPMDVKRMRR MVSNRESARR SRKRKQAHLV DLESQVDNLR GEHASLFKQL  180
TDSSQQLTTA VTDNRILKSD VEALRAKVKL AEDMVAQAQA ALSCGLGHLG LSPALNARQA  240
CRIPDVLAGL DFPGDDACFT GLSPTEQVQS SPMQSMASLE SLENQMLGEV VDVWGWDSHS  300
NGGMSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRSRKRK
2148155RRSRKRKQ
3150155SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000095G1840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0954150.0FP095415.1 Phyllostachys edulis cDNA clone: bphyem113j12, full insert sequence.
GenBankFP0988050.0FP098805.1 Phyllostachys edulis cDNA clone: bphyem201m13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315644.11e-164basic leucine zipper 9-like isoform X1
SwissprotQ6H5001e-146RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A194YMZ41e-163A0A194YMZ4_SORBI; Uncharacterized protein
STRINGSb04g005020.11e-164(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-36basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]