PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000088G0910
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 226aa    MW: 24335.5 Da    PI: 10.5034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000088G0910genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-1956105255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr++  +g+WvAeIr p++   r+r++lg+f taeeAa  ++ a+ +l+g
  PH01000088G0910  56 QYRGVRQRQ-WGKWVAEIRLPRS---RARVWLGTFETAEEAAITYDTAAYRLRG 105
                      7*****999.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.97E-2755115No hitNo description
PROSITE profilePS5103223.24856113IPR001471AP2/ERF domain
SMARTSM003802.7E-3256119IPR001471AP2/ERF domain
PfamPF008479.1E-1256105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-3056114IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2156114IPR016177DNA-binding domain
PRINTSPR003678.7E-115768IPR001471AP2/ERF domain
PRINTSPR003678.7E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVKLQQDLAA DNVDVPFQTP SVSVLNLFGS NAEVRTGIAA GGTADRNGNN GKGQKQYRGV  60
RQRQWGKWVA EIRLPRSRAR VWLGTFETAE EAAITYDTAA YRLRGDAAWL NFPHLKHQLI  120
VGAHARAHHR CEATVALLEA KLTATAQRRF GCASPLPTSA SKRHKKNVAG GSVETVRPET  180
GGKKARAHGL DADAVLLSRM PSLDMDLIWD SLPSTAASAS ARDCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2155113463ATERF1
3gcc_A4e-2155113463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000088G0910
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440558.14e-45PREDICTED: ethylene-responsive transcription factor ERF062
RefseqXP_012071137.16e-45ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ05e-42ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A2G5CXQ26e-46A0A2G5CXQ2_AQUCA; Uncharacterized protein
STRINGAquca_034_00155.11e-46(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2292046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-44ERF family protein