PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000083G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 448aa    MW: 49018.2 Da    PI: 7.5453
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000083G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-092843211954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  PH01000083G0580 284 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 321
                      664459******************************88 PP
2BELL102.92.2e-33142210472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      el+++ka+Lls++eeVd+rY++y+eq+++v  sFeav+g g+a++Yt+lAl+a+SrhFrcL+d +++qi
  PH01000083G0580 142 ELERRKARLLSMVEEVDRRYRRYREQMRAVELSFEAVVGAGAAQVYTKLALRAMSRHFRCLRDSLVGQI 210
                      899****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-5474208IPR006563POX domain
PfamPF075261.1E-4180206IPR006563POX domain
PROSITE profilePS5007111.693262325IPR001356Homeobox domain
SMARTSM003897.8E-9265329IPR001356Homeobox domain
CDDcd000861.10E-11265326No hitNo description
SuperFamilySSF466892.95E-17266332IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27268331IPR009057Homeodomain-like
PfamPF059202.0E-17282321IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MAMEAPPPFD HGLLALHDAG TGMQGGGGGV LADTTSSWPQ VSFSLYNTAG GSLVGHRQQP  60
YTAPPSVAHS LPSTMQHFHL RSSNYLGPVK ELLGEFCSLE GDLHAMNSTS RAPKAGKWDD  120
VEASSSSSPW ANSSLSSMDL LELERRKARL LSMVEEVDRR YRRYREQMRA VELSFEAVVG  180
AGAAQVYTKL ALRAMSRHFR CLRDSLVGQI RALRKAMGER DAGGGGVAAV AGATKGDTPK  240
LKVLDQCLRQ QRAFQQSGTM ESYPWRPQRG LPERAVAILR AWLFEHFLHP YPNDVDKHIL  300
ARQTGLSRSQ VSNWFINARV RLWKPMIEDM YTEETKQSDG NQNPSGGGGP DHKNTTALTE  360
TLGESHHRTG NPNSFVPAIV ADGDGHFHSY PSLHGGGAVS LTLGLQQQPF ASSMMQQRSL  420
MLEEEEEDAV LPYRNLMGSQ LLRDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16271328158Homeobox protein Meis1
4xrs_B4e-16271328158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000083G0580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964302.10.0homeobox protein BEL1 homolog
RefseqXP_004964303.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-100BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A0A9N9I20.0A0A0A9N9I2_ARUDO; Uncharacterized protein
STRINGSi006303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.18e-84TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]