PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000073G0280
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 386aa    MW: 42250.6 Da    PI: 5.9356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000073G0280genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS203.61.1e-62105384120374
             GRAS 120 sqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkp...gEala 203
                      s+G+ Wp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvpf+f+++++  +l++l+l++L++++     ala
  PH01000073G0280 105 SHGAPWPTLLEALATRSaDDTPHLSITTVVSAAPSaptasVQRVMREIGQRMEKFARLMGVPFRFRAVHHAgDLAELNLDALDLREggaTTALA 198
                      6899*************889***********9888899988999***********************97767**************888889** PP

             GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.............sFlerflealeyysalfdsleaklpreseeri 283
                      Vn+v +l  ++  ++  +  rd++   +++l P+v++vve+ead+   +             sFl+ f e l+++sa +dsle+++p++s+er 
  PH01000073G0280 199 VNCVNSLRGVV--PGGARR-RDAFAASLRQLDPRVLTVVEEEADLvA-SdpnasdeggdteaSFLKVFGEGLRFFSAYMDSLEESFPKTSNERL 288
                      **********9..555555.99********************99954.448999**************************************** PP

             GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.......sgslvlgWkdrpLvsv 370
                       +Er   gr+iv++v+c  +e+ er+et++ W +r+++aGF+pv++se++a+++++llr++  +g+++ e         + ++l Wk++pLv++
  PH01000073G0280 289 ALERG-AGRAIVDLVSCPASESMERRETAAAWARRMRSAGFSPVAFSEDVADDMRSLLRRYR-EGWSMREVgtddsaaGAGVLLAWKEQPLVWA 380
                      *****.*******************************************************9.88777744444555344555*********** PP

             GRAS 371 SaWr 374
                      SaWr
  PH01000073G0280 381 SAWR 384
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.511358IPR005202Transcription factor GRAS
PfamPF035143.9E-60105384IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MDTLFRLVSL RATEQQQQSA SYNSRSTTST SSRSSSHQTN ASYNYYHHSN SGGGGGGGGQ  60
YYCSQNQYQQ PYYLEPYQEE CGNAHHHQYM DEDFSSSSSS RHFHSHGAPW PTLLEALATR  120
SADDTPHLSI TTVVSAAPSA PTASVQRVMR EIGQRMEKFA RLMGVPFRFR AVHHAGDLAE  180
LNLDALDLRE GGATTALAVN CVNSLRGVVP GGARRRDAFA ASLRQLDPRV LTVVEEEADL  240
VASDPNASDE GGDTEASFLK VFGEGLRFFS AYMDSLEESF PKTSNERLAL ERGAGRAIVD  300
LVSCPASESM ERRETAAAWA RRMRSAGFSP VAFSEDVADD MRSLLRRYRE GWSMREVGTD  360
DSAAGAGVLL AWKEQPLVWA SAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-98110385213474Protein SHORT-ROOT
5b3h_B5e-99110385159420Protein SHORT-ROOT
5b3h_E5e-99110385159420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000073G0280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709790.0AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694703.10.0PREDICTED: protein SHORT-ROOT 1
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotA2YN561e-171SHR1_ORYSI; Protein SHORT-ROOT 1
TrEMBLA0A3B6D9Z10.0A0A3B6D9Z1_WHEAT; Uncharacterized protein
STRINGTraes_2BS_736EF207B1.21e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.13e-75GRAS family protein