PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000068G0840
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GeBP
Protein Properties Length: 382aa    MW: 41429.7 Da    PI: 5.5489
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000068G0840genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.41.2e-3477176297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                      lfqrlw+eeDeiv+L+G+ +f+a +g+   +++ d+d fye +++++++++sk+qlveK+rrLK+K++++v++ + sg ++sf+++h+q ife+
  PH01000068G0840  77 LFQRLWTEEDEIVILRGFAEFTAARGTafASHQyDTDPFYEDIRRRLQLDFSKTQLVEKLRRLKRKYRNCVSRlRGSGASFSFRSPHEQAIFEI 170
                      69************************99877778***************************************8889***************** PP

           DUF573  92 skkiWg 97 
                      ++ iW+
  PH01000068G0840 171 ARNIWR 176
                      *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-3178175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MHPTGDDPSA VAATISFPDA DADDDSEDGD FTDAPLLDPS DPSLPNPTSS SATVLPSATA  60
TGGSGGLVQS GGERRLLFQR LWTEEDEIVI LRGFAEFTAA RGTAFASHQY DTDPFYEDIR  120
RRLQLDFSKT QLVEKLRRLK RKYRNCVSRL RGSGASFSFR SPHEQAIFEI ARNIWRPTNK  180
HGRDPSADSD DEDAAAAAAA AAVATAVPAN TSPNGEVKSP SSGRQRRRRR RRTTEFAAAT  240
TPAPAINMVQ PPQPVQVPVS VPAKMDDSLP ALPQTPMPVT VTMEGSEPLR FPVMSPQSGV  300
VDAEKSCLTP LFKEMISAVI NIGSNPFGVK LPEPPLGLPM EGEKWRKQRI LELEVYLKRI  360
ELLQDQVKAT LLELKSSTPG T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223230RQRRRRRR
2223231RQRRRRRRR
3224230QRRRRRR
4225231RRRRRRR
5227232RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000068G0840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799483.10.0probable transcription factor At3g04930
TrEMBLA0A1E5UXC00.0A0A1E5UXC0_9POAL; Uncharacterized protein
STRINGSb02g040550.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-36DNA-binding storekeeper protein-related transcriptional regulator