PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000068G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 570aa MW: 60467.3 Da PI: 6.1582

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000068G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.4	3.7e-14	117	179	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+ kr r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ PH01000068G0070 117 EENAKRRARLVRNRESAHLSRQRKKQYVEELEGKVKAMQATIADLTARISCVTAENAALKQQL 179 6789********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-12	117	181	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-12	117	179	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.036	119	179	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.38E-13	121	179	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-16	121	179	No hit	No description
CDD	cd14704	9.11E-22	122	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MAEPSLLAPT AFADLPFPAA LGDDLPEFPP PIDDTLAFED FDLDDLDLDF DLDLFSTDVQ 60 LPPPPLATSS SSAGSPDRGS SSSGAGGDVS LRNEESSESS SRSASAGSDG KPKARDEENA 120 KRRARLVRNR ESAHLSRQRK KQYVEELEGK VKAMQATIAD LTARISCVTA ENAALKQQLG 180 GAGGAGAPPP LPMYPAVYPL PPPWIHPAYA MRSSQVPLVP IPRLKTQQPA PTVVESPAKK 240 ARKAKKVASV SLLGLLFLVM VCGCLVPAVN RMYGAVDPGE GAAFGPSHQG RVLAVEGPHN 300 SASDGIDSKV PQKASETLPA LLYLPRNGKH VKINGNLVIK SIVASEKASS CMSNYSGKSS 360 GSEGKEETTL AIPGYVAPLE SGEVMESAKE MKNELMALAP GDGSIYREDD GMLPQWFSEA 420 MSGPMLSSGM CTEVFHFDSS PTSAHANGIV PVYSNAMSNS SQNFTENHPS RRAQKVKNRR 480 ILYSEAIPLQ GSTSNGTEHL EAPPKNESYA GGKPVSSVVV SVIADPREDG EGRISSKSFS 540 RIFVVLLIDS VKYVTYSCVL PFKNHSPHL*

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MAEPSLLAPT AFADLPFPAA LGDDLPEFPP PIDDTLAFED FDLDDLDLDF DLDLFSTDVQ  60
LPPPPLATSS SSAGSPDRGS SSSGAGGDVS LRNEESSESS SRSASAGSDG KPKARDEENA  120
KRRARLVRNR ESAHLSRQRK KQYVEELEGK VKAMQATIAD LTARISCVTA ENAALKQQLG  180
GAGGAGAPPP LPMYPAVYPL PPPWIHPAYA MRSSQVPLVP IPRLKTQQPA PTVVESPAKK  240
ARKAKKVASV SLLGLLFLVM VCGCLVPAVN RMYGAVDPGE GAAFGPSHQG RVLAVEGPHN  300
SASDGIDSKV PQKASETLPA LLYLPRNGKH VKINGNLVIK SIVASEKASS CMSNYSGKSS  360
GSEGKEETTL AIPGYVAPLE SGEVMESAKE MKNELMALAP GDGSIYREDD GMLPQWFSEA  420
MSGPMLSSGM CTEVFHFDSS PTSAHANGIV PVYSNAMSNS SQNFTENHPS RRAQKVKNRR  480
ILYSEAIPLQ GSTSNGTEHL EAPPKNESYA GGKPVSSVVV SVIADPREDG EGRISSKSFS  540
RIFVVLLIDS VKYVTYSCVL PFKNHSPHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000068G0070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800125.1	0.0	bZIP transcription factor 60-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	A0A0E0LP01	0.0	A0A0E0LP01_ORYPU; Uncharacterized protein
STRING	OPUNC07G22690.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	2e-66	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]