PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000063G1010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 281aa    MW: 30829.5 Da    PI: 6.8636
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000063G1010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09120167455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+  Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  PH01000063G1010 120 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 167
                      799***********************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.39E-11114171No hitNo description
SuperFamilySSF474593.01E-17114183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.396116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-10122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGLTNASH SIPGFLFCHG HGAATTASTI PEDASMETSS AVLDTSPQGT  60
ASVEKKSKPR EDSASLNTAH SKDSKENTRK RGGKKHKEME EEAPKGYIHV RARRGQATDS  120
HSLSERVRRE RISERMRMLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL  180
SPVLYGFGMD SDAFSDHTQK IEGMFHEAVA MPTSALNRAS PAPSQAIMDT NTSSEPYSLQ  240
GQGGISFSQD NGSYMMQTVG EPRQELFNQV VFNNYMRSFQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997KRGGKKHKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000063G1010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660828.11e-165PREDICTED: transcription factor bHLH76-like
SwissprotQ93W886e-51BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0D9XFI21e-165A0A0D9XFI2_9ORYZ; Uncharacterized protein
STRINGLPERR09G12170.11e-165(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-40bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]