PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000063G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 250aa    MW: 27052.4 Da    PI: 10.1744
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000063G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM124.21.1e-38221551128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya..tgk.rknratksgyWkatgkdk 90 
                      lppGfrFhPtdeelvv+yL++k+ +++l++  vi+ + d+ k++PwdLp    a+e e yfFs ++  ++  +g+  ++r + sgyWkatgk+k
  PH01000063G0560  22 LPPGFRFHPTDEELVVQYLRRKALSSPLPA-AVIPVIhDVAKLDPWDLP---GASEGEKYFFSLQQAPARgrKGSgGHRRRAGSGYWKATGKEK 111
                      79***************************9.8899998***********...3456799***9988766544333234446799********** PP

              NAM  91 evlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +v+ +        k+++vg+k+ Lvf++g+ ++  +tdWvmheyrl
  PH01000063G0560 112 PVFLQgsgcdgggKRQVVGVKTALVFHRGKPSS--RTDWVMHEYRL 155
                      ****9999999887888**********988877..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-4414188IPR003441NAC domain
PROSITE profilePS5100545.86522188IPR003441NAC domain
PfamPF023658.6E-2523155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MERPVAAAVR HVAAAVQALR QLPPGFRFHP TDEELVVQYL RRKALSSPLP AAVIPVIHDV  60
AKLDPWDLPG ASEGEKYFFS LQQAPARGRK GSGGHRRRAG SGYWKATGKE KPVFLQGSGC  120
DGGGKRQVVG VKTALVFHRG KPSSRTDWVM HEYRLATVPG GVAEQNKSAS NNCVAQPGEW  180
VVCRIFLKNR SRRPTGEADS QTPGSHATVH RTVQHREDAG LHQPLLSSSS SSSCVTDISD  240
QEEVSSSQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-352219117168NO APICAL MERISTEM PROTEIN
1ut4_B7e-352219117168NO APICAL MERISTEM PROTEIN
1ut7_A7e-352219117168NO APICAL MERISTEM PROTEIN
1ut7_B7e-352219117168NO APICAL MERISTEM PROTEIN
3swm_A7e-352219120171NAC domain-containing protein 19
3swm_B7e-352219120171NAC domain-containing protein 19
3swm_C7e-352219120171NAC domain-containing protein 19
3swm_D7e-352219120171NAC domain-containing protein 19
3swp_A7e-352219120171NAC domain-containing protein 19
3swp_B7e-352219120171NAC domain-containing protein 19
3swp_C7e-352219120171NAC domain-containing protein 19
3swp_D7e-352219120171NAC domain-containing protein 19
4dul_A7e-352219117168NAC domain-containing protein 19
4dul_B7e-352219117168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000063G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0963020.0FP096302.1 Phyllostachys edulis cDNA clone: bphylf003f07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957303.19e-98NAC domain-containing protein 41
SwissprotO227983e-50NAC41_ARATH; NAC domain-containing protein 41
TrEMBLK3ZWG02e-96K3ZWG0_SETIT; Uncharacterized protein
STRINGSi030942m4e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.17e-46NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]