PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000057G1960
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family FAR1
Protein Properties Length: 433aa    MW: 49185.9 Da    PI: 8.4532
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000057G1960genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1423e-13126208272
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek 72 
                       Yn+YA++ GF +r++ s+ sk +++i++r+f Cs   k+ ee k+            t  +r+ +   + gCka+++v + +
  PH01000057G1960 126 VYNNYAYKFGFGMRIACSRISKVTNQIIRREFECSHARKPVEEGKNsttnsvgisavkTIGARKWNRMMKFGCKAHIVVVRLD 208
                      7******************************************9999********998888999999**********997764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-11126207IPR004330FAR1 DNA binding domain
PfamPF105516.9E-9233273IPR018289MULE transposase domain
PfamPF026314.5E-16325425IPR003783Regulatory protein RecX
Gene3DG3DSA:1.10.10.103.3E-4331352IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006282Biological Processregulation of DNA repair
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MSHLIRNLEF PPPNHPFIRP PPPIVVTDPS NLESQQSAVE RMTVNTTSAS SSNHRTHPSS  60
EVLLLVDTDL SVDKGESLKI GDDADYTMAD VASDECDDQD EDVVCSQPIV PYVGMVFDTL  120
EEAKKVYNNY AYKFGFGMRI ACSRISKVTN QIIRREFECS HARKPVEEGK NSTTNSVGIS  180
AVKTIGARKW NRMMKFGCKA HIVVVRLDEN QAVRALFWVD GQTKSLYQSF RYCVFFDTTF  240
MTNRYNMPFA PFVGINNHMQ TILLGAFTVS EKNYVILIHW IIILVESTSV ESCGDYPSLE  300
LMYKKSYNWI AFDDPIAFGW GIPKRSRWLS STWGSRRIKQ ALRQKGVSEA EVGQVTMRVF  360
QDGHGRANQT MYGNSEASMD HLFAQASKQW QRGQSLPMEN RRAHVVRWLQ YRGFNWAVTN  420
AIVRKLEAQH PP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000057G1960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.41e-13FAR1-related sequence 2