PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000057G1420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 929aa    MW: 102925 Da    PI: 5.6206
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000057G1420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.41.8e-20143242186
                      EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                      f+k lt sd++++g +++p++ ae+                ++++++ ++l+++d++ + W++++iyr++++r++lt+GW+ Fv a++Lk+gD+
  PH01000057G1420 143 FCKNLTASDTSTHGGFSVPRRAAEKLfpqllrgyvldpqdySMQPPN-QELIVRDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDS 235
                      89*********************999*************99555555.49******************************************** PP

                      EEEEE-S CS
               B3  80 vvFkldg 86 
                      v+F +++
  PH01000057G1420 236 VLFIRTS 242
                      ***8543 PP
2Auxin_resp84.81.8e-282403051883
       Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      r+s+s Fv+++++++ka++v+ svGmRf ++fete+ss+rr++Gt+vg+sd+dp+rWpnSkWr+L+
  PH01000057G1420 240 RTSPSPFVIPLARYNKATYVQPSVGMRFAVMFETEESSKRRYTGTIVGISDYDPMRWPNSKWRNLQ 305
                      799*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-36133246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-30136246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.37E-18142238No hitNo description
PfamPF023621.8E-18143242IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293143254IPR003340B3 DNA binding domain
SMARTSM010197.9E-17143254IPR003340B3 DNA binding domain
PfamPF065071.1E-23240305IPR010525Auxin response factor
SuperFamilySSF542771.5E-8820903No hitNo description
PROSITE profilePS5174524.655824908IPR000270PB1 domain
PfamPF023094.2E-8869911IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MATSQEKPKS GVLRNATALL DEMQLLGETQ GAKKVINSEL WHACAGPLVC LPQRGSLVYY  60
FPQGHSEQVA ATTRKIPNSR IPNYPNLPSQ LLCQVHNITL HADKDTDEIY AQMTLQPVNS  120
ESDVFPIPTL GTYTKSKHPT EYFCKNLTAS DTSTHGGFSV PRRAAEKLFP QLLRGYVLDP  180
QDYSMQPPNQ ELIVRDLHDN LWTFRHIYRG QPKRHLLTTG WSLFVGAKRL KAGDSVLFIR  240
TSPSPFVIPL ARYNKATYVQ PSVGMRFAVM FETEESSKRR YTGTIVGISD YDPMRWPNSK  300
WRNLQVEWDE HGYGERSERV SMWDIETPEN TLVFPSPALN SKRQCLPSYG VPGLEIGSAN  360
VSSFPRAQAN PYRNLQHMPA IGPELAMMLL NQSGQNIGSP LSCHQSSYSS IIQNVKQNYV  420
TPSAFGTSTG PIKQESMTSN EAQQQLHTPK AKMQKGDLES CEVQPVIDSI SVSELNVTAR  480
EPRNTDSYSS QSISEHVTAR EPRNTDSYSS QSISEQNSKG EPRVKTRRSK KGLSHKTISE  540
KSDLSVPPRI CDDQQHVLEA NLVDCDGEQV NCGNNEDSTG ALTQGIFAGQ AQGEQVEQNG  600
LLSPPKIESS KSPDGGKSVN SFPNQGCFSQ FFDGLDWIIQ PSFYQDSNGI QSVSASENNF  660
SSSADIPSTI NADTMETFQT SCLSDCFPNS IQEFICSPDL NSLTFLSPEM QNLDVQQDGS  720
NLPSTSNSYV QMSFSEESGN QSASLSGLHL ESTQRSMTNT SCSQPQTTGA FDVAMYSKLP  780
SLKESQVLSL QEIHNSSMGT SSCSMDATEY SIDRSAKPMK PPVRTYTKVQ KQGSVGRSID  840
VTRFRDYHEL RSAIACMFGL QGKLEHPGSS DWKLVYVDYE NDVLLVGDDP WEEFINCVRC  900
IRILSPSEVQ QMSENGMHVL NDCIQTAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561732831390Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000057G1420
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881052.10.0auxin response factor 11-like isoform X1
SwissprotQ01K260.0ARFK_ORYSI; Auxin response factor 11
SwissprotQ8S9830.0ARFK_ORYSJ; Auxin response factor 11
TrEMBLA0A0E0PFA60.0A0A0E0PFA6_ORYRU; Auxin response factor
STRINGORUFI04G30260.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86733241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-162ARF family protein
Publications ? help Back to Top
  1. Shen C, et al.
    Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.).
    J. Exp. Bot., 2010. 61(14): p. 3971-81
    [PMID:20693412]
  2. Indoliya Y, et al.
    Decoding regulatory landscape of somatic embryogenesis reveals differential regulatory networks between japonica and indica rice subspecies.
    Sci Rep, 2016. 6: p. 23050
    [PMID:26973288]