PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000042G1280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Trihelix | ||||||||
Protein Properties | Length: 124aa MW: 13026.3 Da PI: 4.2814 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 40.6 | 6.7e-13 | 89 | 124 | 1 | 36 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+++e+laLi++r+em++++r++ lk+plWeevs+ PH01000042G1280 89 RWPREETLALIRIRSEMDTTFRDATLKGPLWEEVSR 124 8*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.10E-15 | 88 | 124 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MQQHQGGGSQ FGAPPPDMGP FSPQPAPGPV PLSSWPPPTS QPQAQQQQQT RPSYEELAAV 60 SGAGAGSFPD DDMVGDAVAG GGSGAAGNRW PREETLALIR IRSEMDTTFR DATLKGPLWE 120 EVSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000042G1280 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101710 | 0.0 | FP101710.1 Phyllostachys edulis cDNA clone: bphylf025p10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825675.1 | 5e-37 | trihelix transcription factor GTL1-like isoform X2 | ||||
TrEMBL | A0A3L6PWB5 | 1e-38 | A0A3L6PWB5_PANMI; Uncharacterized protein | ||||
STRING | Traes_2BL_0B80B3876.2 | 2e-36 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15223 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 6e-18 | GT-2-like 1 |