PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000041G2170

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 340aa MW: 37228.1 Da PI: 7.1607

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000041G2170	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.7	5.6e-54	18	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL+kkv++ ++++ ++ e++++++ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk++++ PH01000041G2170 18 LPPGFRFHPTDEELITHYLAKKVADARFSA-LAVGEANLNNCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFR 110 79***********************999.67***********8888899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfy+grapkge++ Wvmheyrl PH01000041G2170 111 -GKALVGMKKTLVFYTGRAPKGERSGWVMHEYRL 143 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-63	13	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.36	18	170	IPR003441	NAC domain
Pfam	PF02365	2.4E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MRTASQPMEH DEQHAMDLPP GFRFHPTDEE LITHYLAKKV ADARFSALAV GEANLNNCEP 60 WDLPSLAKMG EKEWYFFCLK DRKYPTGLRT NRATEAGYWK ATGKDKDIFR GKALVGMKKT 120 LVFYTGRAPK GERSGWVMHE YRLDGKLHAA ACGLPSKSKN EWVLCRVFKK YPVGVVSPSA 180 EAAAKKGAVE MGKIGSSMAD DVAIFPLPPL MDMSGAGVDP VAHVTCFSNA LEGQFFNPTA 240 HAGDRTDHHS LASSSPFLAS FTQYGGQLHQ DHGMSLVQLL ESNGYGGLVD MAGAKQQPAC 300 KCERERMSAS QDTGLTSDVN PEISSSSGQK FDHEAALWSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-52	9	170	11	168	NAC domain-containing protein 19
3swm_B	7e-52	9	170	11	168	NAC domain-containing protein 19
3swm_C	7e-52	9	170	11	168	NAC domain-containing protein 19
3swm_D	7e-52	9	170	11	168	NAC domain-containing protein 19
3swp_A	7e-52	9	170	11	168	NAC domain-containing protein 19
3swp_B	7e-52	9	170	11	168	NAC domain-containing protein 19
3swp_C	7e-52	9	170	11	168	NAC domain-containing protein 19
3swp_D	7e-52	9	170	11	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000041G2170

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093111	0.0	FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence.
GenBank	FP097753	0.0	FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633922.1	1e-177	NAC domain-containing protein 92
Refseq	XP_015633924.1	1e-177	NAC domain-containing protein 92
Swissprot	Q9FLJ2	3e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A0D9ZLQ5	1e-176	A0A0D9ZLQ5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H1Q2	1e-176	A0A0E0H1Q2_ORYNI; Uncharacterized protein
TrEMBL	I1PLX8	1e-176	I1PLX8_ORYGL; Uncharacterized protein
STRING	OGLUM04G14830.2	1e-177	(Oryza glumipatula)
STRING	ONIVA04G13100.2	1e-177	(Oryza nivara)
STRING	ORGLA04G0119700.1	1e-177	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-96	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]