PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000038G0840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 251aa MW: 27663.2 Da PI: 6.7932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 7e-20 | 98 | 148 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +grW+AeIrdp + +r++lg++g ae Aa+a+++a+++++g PH01000038G0840 98 KKYRGVRHRP-SGRWAAEIRDPQ----QgQRVWLGTYGNAEAAARAYDQAARRIRG 148 59*****999.7*********94....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.03E-20 | 98 | 157 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 99 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-35 | 99 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-13 | 99 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-21 | 99 | 157 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.117 | 99 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-11 | 138 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MCGDAILSDL TPDRVQRRLT VAVLWPNAFS AERKATGKRK AAASTDDEFE EEFQLFEADD 60 DEEEAPAVPS ARKAPSLAVS DVSVSSSSKP RMAGPNSKKY RGVRHRPSGR WAAEIRDPQQ 120 GQRVWLGTYG NAEAAARAYD QAARRIRGKS ARLNFPHEDC PPRRRNVPER IDLNLPVISD 180 DDMMAVDAVA EMGDEPVERT LMMKIKKLIM QGPHDEQMVS VISELMDGAN RSKNSVRSAA 240 VCGVDSRMQP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-21 | 91 | 158 | 6 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000038G0840 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985472.1 | 1e-69 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | K4ADI1 | 3e-68 | K4ADI1_SETIT; Uncharacterized protein | ||||
STRING | Si036647m | 3e-63 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13664 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 7e-16 | cytokinin response factor 4 |