PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000037G0560

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 470aa MW: 51751.8 Da PI: 6.4614

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000037G0560	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.7e-09	171	205	5	39
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ PH01000037G0560 171 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQ 205 8999***************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.0E-4	167	231	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.519	169	205	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.3E-8	171	205	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-10	171	206	No hit	No description
SuperFamily	SSF57959	7.23E-9	171	212	No hit	No description
CDD	cd14703	9.97E-17	172	205	No hit	No description
PROSITE pattern	PS00036	0	174	189	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MAQLPPKIPT MAPAWPEFGG GHHHHHQRSP SMGAFLAAPM PPLPPAANGA QQQPSWVDEF 60 IDFSAAKRGA HRRSVSDSVA FLEAVPDDNA DVRAHEFDRL DDDQLMSMFS DDLQPPPQAA 120 APSESSPSDH NSINDEKQDK GETEEAQSEF NGDGDGAAPG QPASPSMVDP KRVKRILANR 180 QSAQRSRVRK LQYISELERS VTSLQVRAEF THSATELCIL RAFGVEFFQE AREFDRELRA 240 SEQTEVSALS PRVAFLDHQR SLLMLGNSHL KQRIAALAQD KIFKDGDRHC HLSYYHNSRQ 300 SLSGFNSRCM HAAAAMPLSQ NLLLLTLPEL ALLSSSGGTE EGDREAEANL PPTKPQERGI 360 PTARRAVDRG CVYFTIEQVY SVTCKATGRQ PDMQGTSLLA VSSQDFKNGD NEEERMLFSL 420 VDLGDGDNRG WKDAKVKRNR SSLDPAQRGA KVTVRPINKL KPTNVGPIY*

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MAQLPPKIPT MAPAWPEFGG GHHHHHQRSP SMGAFLAAPM PPLPPAANGA QQQPSWVDEF  60
IDFSAAKRGA HRRSVSDSVA FLEAVPDDNA DVRAHEFDRL DDDQLMSMFS DDLQPPPQAA  120
APSESSPSDH NSINDEKQDK GETEEAQSEF NGDGDGAAPG QPASPSMVDP KRVKRILANR  180
QSAQRSRVRK LQYISELERS VTSLQVRAEF THSATELCIL RAFGVEFFQE AREFDRELRA  240
SEQTEVSALS PRVAFLDHQR SLLMLGNSHL KQRIAALAQD KIFKDGDRHC HLSYYHNSRQ  300
SLSGFNSRCM HAAAAMPLSQ NLLLLTLPEL ALLSSSGGTE EGDREAEANL PPTKPQERGI  360
PTARRAVDRG CVYFTIEQVY SVTCKATGRQ PDMQGTSLLA VSSQDFKNGD NEEERMLFSL  420
VDLGDGDNRG WKDAKVKRNR SSLDPAQRGA KVTVRPINKL KPTNVGPIY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000037G0560

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100944	1e-116	AK100944.1 Oryza sativa Japonica Group cDNA clone:J023138F18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191576.1	1e-109	basic leucine zipper 2-like
Swissprot	Q5QNI5	1e-112	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	A0A3B6ECI2	1e-123	A0A3B6ECI2_WHEAT; Uncharacterized protein
STRING	Traes_2AS_6EA1E372F.1	1e-114	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-60	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]