PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000035G0640
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 543aa    MW: 57884.9 Da    PI: 7.7751
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000035G0640genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-05405427123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y Cp C+k+F+++  L  H+ +H
  PH01000035G0640 405 YGCPTCHKTFPTHQALGGHMASH 427
                      67******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.04786108IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.13886108IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-886108No hitNo description
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
PfamPF139125.0E-488110IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-8400427No hitNo description
SMARTSM003550.011405427IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-9405428IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889405432IPR007087Zinc finger, C2H2
PROSITE patternPS000280407427IPR007087Zinc finger, C2H2
PfamPF139126.3E-10484508IPR007087Zinc finger, C2H2
SMARTSM003550.18485507IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280487507IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDLRAYYIQA AEESAAVHTT EDDVPKLAAK AVLLKLEVQG IGLGGDADDA PALPRYGKSL  60
SGQGNGVAPM GMDNDKAAEG GGARNLTCPE CGKAFLSDKA MYGHLRCHPE KGYRGATRPA  120
DAATAAMVGG KKPRKVPRKE AEVSTMSPTA SAAVSGDKKP NKVPWKEAEL STSWPATAKR  180
GRGRVPPTAN AESAAPVVVL QSICSEEEAA MILLDMSSRG QTPEPELPMQ LVHVADAVAE  240
HQMPGVEQPM LPDHVADAVE MHHEPEVEQP MVPDRHVAGA VAGQHMWEAE KPAQLEHVFK  300
VVMEPQAAEA EHVLRPEHVA KVTAEPQTPV VKKPMKLEPV TDAVLVVVRT KNGGPADKPV  360
SPGAKKPKKR RLHDLEQTPA SPPPEAADVK KPARRIPSPA SDRRYGCPTC HKTFPTHQAL  420
GGHMASHNKG KYGGAQHVDG LAVAHAVNNI MAHHHSHSVI AAAAGLGEER REYPLVPMAQ  480
SPAHHPCSRC HLTFPTGQAL GGHMRKHWLA DKLFAKAAAA PSGVPRDFDL NELPRKEGEK  540
EN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364371KKPKKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000035G0640
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-13zinc-finger protein 2