PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000030G0570
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 429aa    MW: 47393.3 Da    PI: 9.5019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000030G0570genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-123485155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +r +h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k+L+
  PH01000030G0570 34 QRITHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 85
                     799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.7E-133289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1732104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-133289No hitNo description
PROSITE profilePS5088814.9453384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-103485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-103990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MPAAEGEGEK ALQGRRKRRR RSRSCKNRED AESQRITHIA VERNRRRQMN EYLAVLRSLM  60
PESYVHRGDQ ASIVGGAIDF VKELEQLLQS LEAQKRTLLM RQQHKAKCGA MPMPTTTSTV  120
TTAGVDTTSN CSSGSGAGEE ATAACDSAGP PFARFFTYPQ YVWCHPARGG GTGAENRAGV  180
ADIEVNLVET HASVRVMAPR RPGQLLKMVA GLQVLRLTIL HLNVTVFDSL ALYSLSVKVE  240
EGCGLTTVDD IAAAVHHVLC IIDAEAASQR LLAGGALWIE QVVLPCRFHQ LKRLVVANVS  300
VDRRRQWNLV ASRLRQVVQS RLVIGWMRSR QEEEVSVFVG MDCHSVDTDF MCDPHKNESV  360
FVGKDSYSDD IDFVSIPPKK KRCSPRLKTK DSSAPRQPCT ETKHIHVPNP APATCGKKRK  420
QPESIHKV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420RRKRRRR
21519RKRRR
31521RKRRRRS
41522RKRRRRSR
5378387KKKRCSPRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000030G0570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691558.11e-117PREDICTED: transcription factor bHLH96-like
RefseqXP_020174319.11e-116transcription factor bHLH94-like
SwissprotQ9C7T42e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D9W8T11e-116A0A0D9W8T1_9ORYZ; Uncharacterized protein
STRINGLPERR04G19210.11e-117(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.16e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]