PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000026G0570

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bHLH

Protein Properties

Length: 433aa MW: 45374.1 Da PI: 8.9001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000026G0570	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	110	149	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR+ri +++ L+el+ +a K +Ka++L + ++Y+k Lq PH01000026G0570 110 LRRERIAERMKALQELVANA-----NKTDKASMLDEIIDYVKFLQ 149 6****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.233	99	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-6	109	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	109	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-11	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-5	110	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.97E-8	111	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MQPTGREMHG GGGGAGGQDD FLDQMLSTLP AAWPDLGSGK SPWELPGGGA PSEDPAAAAF 60 DESALLASRL RHHQIGGGGD KTGGNQALYN VFGAAGMHGA AAVQPPFGQL RRERIAERMK 120 ALQELVANAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ANMSSESNRN 180 GNGTNSSGND NGANGDNGDS GGSTLQVTEQ QVARLMEEDM GSAMQYLQGK GLCLMPISLA 240 SAISSATSSS LLPRPSIRPL GGAGGPLHEG GSPTSPPLVN GAGGDDSRTI KDTGAGVMLP 300 RRHPMLDRDR VPYTTGKTFH RFPLNAAPTI AIQAITKNSA EFVRPGQHDA GLVGPAHGAA 360 ESMRQGHRAP WSMRQEHGQP PGPCSCGIVR QVHKHGGTVP QNIWLIRPVF NRYLQIWPYA 420 NRICKNGWTG VR*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MQPTGREMHG GGGGAGGQDD FLDQMLSTLP AAWPDLGSGK SPWELPGGGA PSEDPAAAAF  60
DESALLASRL RHHQIGGGGD KTGGNQALYN VFGAAGMHGA AAVQPPFGQL RRERIAERMK  120
ALQELVANAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL GGAAAVAPLV ANMSSESNRN  180
GNGTNSSGND NGANGDNGDS GGSTLQVTEQ QVARLMEEDM GSAMQYLQGK GLCLMPISLA  240
SAISSATSSS LLPRPSIRPL GGAGGPLHEG GSPTSPPLVN GAGGDDSRTI KDTGAGVMLP  300
RRHPMLDRDR VPYTTGKTFH RFPLNAAPTI AIQAITKNSA EFVRPGQHDA GLVGPAHGAA  360
ESMRQGHRAP WSMRQEHGQP PGPCSCGIVR QVHKHGGTVP QNIWLIRPVF NRYLQIWPYA  420
NRICKNGWTG VR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000026G0570

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151181.1	1e-116	uncharacterized protein LOC100284814
TrEMBL	A0A1E5W8J7	1e-125	A0A1E5W8J7_9POAL; Transcription factor bHLH69
STRING	OBART02G35840.1	1e-112	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-37	LJRHL1-like 1