PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000021G2410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 647aa    MW: 68722.4 Da    PI: 9.2169
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000021G2410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.99.4e-13168229162
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                      e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +    L ++++    e ++l+++
  PH01000021G2410 168 EEDKRRATRLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINNLNSKISFVMAENSTLRQQ 229
                      677899**********************************9999**9999999888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-14168232IPR004827Basic-leucine zipper domain
PfamPF001701.0E-10169230IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.174170230IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-15172230No hitNo description
SuperFamilySSF579592.25E-11172230No hitNo description
CDDcd147044.00E-19173223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAEPALVDPS PFDLRHYPPH LFDPDLPLAG VDFPLGDFAG AGGDCDGLDF DLPVDFSVDD  60
FLLRSPDRDD SGDGSAAGSG PTASSSSPTT SAANSAVANG SCEVKHEDSD EGRSGGAPNW  120
GLKRKQASPG VSSDAAKCRR SGDGVVSPSV SASRAAVDSD EGGAVGEEED KRRATRLMRN  180
RESAQLSRQR KKRYVEELEE KVKSMHSVIN NLNSKISFVM AENSTLRQQL VSGGGNCPPP  240
GVYPPAPLPG MHFPWVPGYA LRPHGSHVPL VPIPRLKSQQ PVPASKVVKK PESKKAVENK  300
SKTKTKTKKV ASVSLLGLLF VLLVFGAFVP GFNHSFGMTG GSDNAMFRNF SQSHARVLSV  360
TNHGKGPKGG LNNSDMIGFD LGKMMGNADR AEQKHQPAHN SSEILPALLY VPRNGKHVKI  420
NGNLIIHSVL ASEKAVAHRA SKGNSDQAGI DHKETSVAIA RYLSPPGKDM NQQEKSPADG  480
PLPQWFREGV AGPILNSGMC SEVFQFDIST ASTNSGGIIP ASPIVNSSSV NATQNIPTPA  540
PAYRGKLKNR RIMYNEAIPL TGKTVNTTEP FNRPSESSKL PDSKPASSVV VSVLADPREA  600
GDGDSDPRIS QKPLSRIFVV LLLDGVRYVT YSCTLPFKSA SPHLVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170192KRRATRLMRNRESAQLSRQRKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000021G2410
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655320.20.0PREDICTED: bZIP transcription factor 17-like
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLA0A0A9JME20.0A0A0A9JME2_ARUDO; Uncharacterized protein
STRINGLPERR05G13000.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.15e-93bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]