PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000020G1490
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 387aa    MW: 42550.5 Da    PI: 6.8958
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000020G1490genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.75.8e-2750137286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.t..sessstcpyfdqle 86 
                      W ++e+l Li++rrem+ +++++k++k+lWe++s+kmr +gf rsp++C++kw+nl k++kk + ++++  +   + s +++y+++++
  PH01000020G1490  50 WVQDETLSLIALRREMDPHFNTSKSNKHLWEAISAKMRGQGFDRSPTMCTDKWRNLLKEFKKARSHARSSgAagGNGSAKMAYYKEID 137
                      ****************************************************************999986423356677888998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.38642106IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-542110IPR009057Homeodomain-like
SMARTSM007172.1E-546108IPR001005SANT/Myb domain
CDDcd122035.15E-2848113No hitNo description
PfamPF138372.0E-1849139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLLSGPPPQP TPSPLLSLLL PESSVEDGGG HDRDSSSRAV SAPKKRAETW VQDETLSLIA  60
LRREMDPHFN TSKSNKHLWE AISAKMRGQG FDRSPTMCTD KWRNLLKEFK KARSHARSSG  120
AAGGNGSAKM AYYKEIDDLL KRRGKAAAAG GAAAGSGGGG GAEKSPTATS KIDSYLQFTT  180
DKGFDDANIP FGPVEANGRS LLSVEDHLEP DRHPLALTIA DAVATNGVNP WNWRDTSTNG  240
GDNQGTFRGR VILVKWGDYT KRIGIDGTAE AIKEAIKSAF GFRTRRAFWL EDEDEIVRTF  300
DRDMPVGTYT LHLDDGMTIK LCTFDDADRM NARTENKTFY TEEDFRDFLS RRGWTLLREY  360
GGYRIADTLD DLRPGAIYQG MRSLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A5e-4244135186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000020G1490
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539430.0AK353943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003P04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195254.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-150TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A3B6B0T60.0A0A3B6B0T6_WHEAT; Uncharacterized protein
TrEMBLA0A446L7H10.0A0A446L7H1_TRITD; Uncharacterized protein
STRINGTraes_2AL_73E4240F0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56313752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-142Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]