PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000019G0630
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 417aa    MW: 44128.1 Da    PI: 7.0278
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000019G0630genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.48.2e-28255335186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW+k+ev aLi+    +e r+++  lk+plWeevs +m+++g++rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyf++l+
  PH01000019G0630 255 RWPKHEVEALIR----LEARFQEPGLKGPLWEEVSVRMAATGYRRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFHELD 335
                      8**********8....5899*************************************************98.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-4254309IPR009057Homeodomain-like
PfamPF138372.8E-20254337No hitNo description
PROSITE profilePS500907.445254308IPR017877Myb-like domain
CDDcd122031.81E-27254315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFMMDGGF TMRPLDIDYI HSTSTSKRAA GKEKAATPES PAPIAAANYF  60
KKGDDNAAAA SAGGGNYKLF SELDAIYKPG SGGAGGAQTG SGSGLTGDDN AMLPPAMADL  120
PGSAPADVPQ ANTSETSAGE DAAAVVQPQL QPSADAARRK RKRRRQEQLS ASASFFERLD  180
RASAAAREAA IINYLEKISG ETITLPPPAT NPAPSADDMS QDAAAGIGKE LVAYDGGDGA  240
PGSGEGSALH FSTSRWPKHE VEALIRLEAR FQEPGLKGPL WEEVSVRMAA TGYRRSAKRC  300
KEKWENINKY FRKAKESGKK RPAHAKTCPY FHELDRLYSR SGATPFSAAA DANAGAGDDA  360
KASSELLDAV VKYPDVHYGP PGISVAKTEV FNYKLILVTN AENQLKGYHA HVEWHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162RRKRKR
2158163RKRKRR
3158164RKRKRRR
4159164KRKRRR
5160164RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000019G0630
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200633e-96AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBankAP0040493e-96AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067203e-96AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149583e-96AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126103e-96CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819158.11e-163trihelix transcription factor GT-2-like
TrEMBLA0A0A9CP551e-172A0A0A9CP55_ARUDO; Uncharacterized protein
STRINGSb04g000520.11e-159(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.29e-39Trihelix family protein