PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 678aa    MW: 74361.9 Da    PI: 7.3038
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-2463163198
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + 
  PH01000018G0940  63 FCKTLTASDTSTHGGFSVPRRAAEDCfppldykELRP--SQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RG 152
                      99****************************8765554..459************************************************..34 PP

                      SEE..EEEEE- CS
               B3  88 sefelvvkvfr 98 
                      +++el+++v+r
  PH01000018G0940 153 DDGELRLGVRR 163
                      89999999998 PP
2Auxin_resp109.24.5e-36189269182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a++++++svF+++YnPra++seF+v+ +k++k l++++++GmRfk+++ +ed++err sG+++g++d+dp+rWp+SkWrsL
  PH01000018G0940 189 VANSLKHRSVFHICYNPRATASEFIVPHWKFLKGLNHPFCIGMRFKIQYGSEDVNERR-SGIIAGINDVDPMRWPGSKWRSL 269
                      68999*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.19E-4547202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-3858163IPR015300DNA-binding pseudobarrel domain
CDDcd100177.90E-2361163No hitNo description
PROSITE profilePS5086313.08463165IPR003340B3 DNA binding domain
PfamPF023621.6E-2263163IPR003340B3 DNA binding domain
SMARTSM010194.6E-2463165IPR003340B3 DNA binding domain
PfamPF065072.0E-29190269IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MKQAGRQCCS AVADAVTDEV YARLALVAAG EVFKRNRRGG GIDGEDDMDD DDGERKSRMM  60
HMFCKTLTAS DTSTHGGFSV PRRAAEDCFP PLDYKELRPS QELVAKDLHG AKWRFRHIYR  120
GQPRRHLLTT GWSSFVNKKK LVSGDAVLFL RGDDGELRLG VRRVIQLKND ALFKAFSSDS  180
SKIHTLSAVA NSLKHRSVFH ICYNPRATAS EFIVPHWKFL KGLNHPFCIG MRFKIQYGSE  240
DVNERRSGII AGINDVDPMR WPGSKWRSLL RKKLREVGAG EAKTKTKPEL IENSEPMRSD  300
VEGALGELDA EEALAELGNV EDLEDDNEGP DHDEEKDRRW KMATAGRCCC YLLVRWGDGT  360
DCNSQNRVSP WEIEIVGGSV SITQSLSVSS SKRTKLCPQG NLNVPTLYGN GHPDSMETEK  420
FPRVLQGQEL MGSIAHRVTC SPQSADVTNF KSYDTMKFLT DARSCMLSGP TSRLPPWNSG  480
FTNQSVGFGE SVGFPEVLQG QETSQTVPLF QGMMSDACSL KGRYRSFNYM RTSAAMSGLS  540
AATQGCSLSL STLPPAQLPS ASSDLPFNQT VVPQLELASK NDNKDANGSQ PNPFGIGKAS  600
TPGDAAKLGP DGREVGRKSC RLFGFCLTEK ILPTEEDGVK EGNYETDCQN PRMLELFGHS  660
HSTPGALHAL CAAPLGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-7113293117389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000018G0940
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024315553.11e-163auxin response factor 3
SwissprotQ5JMM11e-149ARFC_ORYSJ; Auxin response factor 3
STRINGBRADI2G50120.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-107ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]