PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000018G0370
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 288aa    MW: 31384 Da    PI: 5.2671
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000018G0370genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-3084142259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh+
  PH01000018G0370  84 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSFDHNHP 142
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-3081144IPR003657WRKY domain
SuperFamilySSF1182901.05E-2582144IPR003657WRKY domain
SMARTSM007741.8E-3583143IPR003657WRKY domain
PROSITE profilePS5081131.61784144IPR003657WRKY domain
PfamPF031066.4E-2685142IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLAEDGYCST GTESPRADSV DEQAAAESPR GGQKRDLPSP SPSPSSPLPP AKRSRRSVEK  60
RVVSVPIADC GDRPKGAGEG PPPSDSWAWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ  120
VERSRADPTV LLVTYSFDHN HPWPMPKSNC HPNKSSPRPP ATKPVPAVDG QPELAEHETE  180
PEVPEGPEQE KEQKLVVELA VITTVAQAPV AEEEESFDFG WFDQYPAWHR SALYAPAFDA  240
APLLPPEEWD RELQGEDALF AGLGDLPECA VVFGRRHKLA LAATAPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-2060144679Disease resistance protein RRS1
5w3x_D6e-2060144679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000018G0370
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947100.0FP094710.1 Phyllostachys edulis cDNA clone: bphyem120k20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817654.11e-131probable WRKY transcription factor 65
TrEMBLA0A3L6SS551e-133A0A3L6SS55_PANMI; Putative WRKY transcription factor 65
STRINGPavir.Eb03138.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-41WRKY DNA-binding protein 69