PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000015G1560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 328aa    MW: 36048.5 Da    PI: 8.7244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000015G1560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52e-102165346
                     SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46
                     +WT++E +++ +a ++l  +  +W+++ar ++ gRt  ++ s++ +
  PH01000015G1560 21 SWTPQENKQFERALAELDLRcpDWEKVARDIP-GRTVFEVMSHFKD 65
                     6*******************************.**********987 PP
2Myb_DNA-binding47.25.2e-15134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
  PH01000015G1560 134 PWTEEEHKLFLLGLNKYGKGDWRNISRNFVQTRTPTQVASHAQKY 178
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.1671771IPR017884SANT domain
SMARTSM007174.6E-51869IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-42064IPR009057Homeodomain-like
PfamPF002491.4E-82166IPR001005SANT/Myb domain
SuperFamilySSF466896.24E-92174IPR009057Homeodomain-like
CDDcd001678.12E-82166No hitNo description
PROSITE profilePS5129417.746127183IPR017930Myb domain
SuperFamilySSF466894.49E-18128183IPR009057Homeodomain-like
TIGRFAMsTIGR015577.9E-17130181IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.8E-12131177IPR009057Homeodomain-like
SMARTSM007175.7E-13131181IPR001005SANT/Myb domain
PfamPF002491.3E-12134178IPR001005SANT/Myb domain
CDDcd001672.12E-11134179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEVLPPMDHY ASRGNWLLAR SWTPQENKQF ERALAELDLR CPDWEKVARD IPGRTVFEVM  60
SHFKDLEVDV QQIESGMVPF PVYGAGGAAS FTLQLHGNGG HGVGDFRHGY RFAGGCGKRH  120
VGRTPEQERK KGVPWTEEEH KLFLLGLNKY GKGDWRNISR NFVQTRTPTQ VASHAQKYFI  180
RLNSGGKDKR RSSIHDITTV NLTDDRPPSP SQPSLLSNQS NTSTLATSVG QLSPSADANQ  240
HGGANVPFNS PSRTLGVPTY GMGLQDQGAV NPLGAMDQMS SVIRSCCIFS TQLPIFEGEG  300
SVCHVGDVWW SIIVGDTKNV TKRTSRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-131188378RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000015G1560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.11e-154transcription factor DIVARICATA-like
SwissprotQ8S9H71e-75DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A9H0E81e-165A0A0A9H0E8_ARUDO; Uncharacterized protein
STRINGLPERR01G02460.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-75Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]