PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000008G0200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ZF-HD | ||||||||
Protein Properties | Length: 180aa MW: 18617.9 Da PI: 5.8666 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 109.4 | 1.9e-34 | 35 | 90 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 ++Y+eClkNhAaslGghavDGCgEfmps+ ++ +++++lkCaACgCHRnFHRr +e PH01000008G0200 35 LVYRECLKNHAASLGGHAVDGCGEFMPSPAANpSDPTSLKCAACGCHRNFHRRLQE 90 78******************************9********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.3E-29 | 36 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 37 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.1E-31 | 37 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.453 | 37 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEAVVDVKYR PVLLPNGVTA AAEAKKLRRA PVGELVYREC LKNHAASLGG HAVDGCGEFM 60 PSPAANPSDP TSLKCAACGC HRNFHRRLQE APPSPPRLAA AAAAVSAPHL VHGGHPQRGE 120 ETPEDRLPTA GEDDSEDSDE GLVLLSTVSS GIVLEGAGDG CASPSPRWGR LLGSYAVLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000008G0200 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005636 | 3e-54 | AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02. | |||
GenBank | AP014965 | 3e-54 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-54 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462378.2 | 1e-41 | zinc-finger homeodomain protein 9 | ||||
Refseq | XP_025822641.1 | 7e-42 | zinc-finger homeodomain protein 9-like isoform X2 | ||||
Swissprot | Q6ER21 | 1e-37 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | A0A1B6QCI2 | 3e-40 | A0A1B6QCI2_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2T8IH38 | 2e-40 | A0A2T8IH38_9POAL; Uncharacterized protein | ||||
TrEMBL | B4FQM0 | 2e-41 | B4FQM0_MAIZE; Uncharacterized protein | ||||
STRING | Pavir.J22492.1.p | 2e-41 | (Panicum virgatum) | ||||
STRING | Sb02g024650.1 | 4e-41 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 8e-28 | zinc finger homeodomain 1 |