PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000006G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 281aa    MW: 31499.8 Da    PI: 6.9443
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000006G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-271059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rien+  rqvtfskRr g+lKKA+E+ vLCd++va+i+fs +gkl+eys+
  PH01000006G0210 10 RIENNVSRQVTFSKRRSGLLKKAHEIGVLCDVDVALIVFSAKGKLHEYST 59
                     8***********************************************96 PP
2K-box60.38.1e-211081641672
            K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                      s++ ++ kL+++ie Lq++qR+l+Ge+L+sL+l+e ++Leqq++++l++iRs+K ++
  PH01000006G0210 108 SMNYDHIKLRSRIEALQKSQRNLMGEQLDSLTLREVHHLEQQIDSALRNIRSRKVRF 164
                      6888899***********************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.515161IPR002100Transcription factor, MADS-box
CDDcd002651.53E-37273No hitNo description
SuperFamilySSF554551.96E-29274IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.659106203IPR002487Transcription factor, K-box
PfamPF014865.3E-16108195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGRGRVQLRR IENNVSRQVT FSKRRSGLLK KAHEIGVLCD VDVALIVFSA KGKLHEYSTH  60
TSMDRILERY ERYLLSEGDV IGDYPEMELC VVALFTLLRT LICTGQGSMN YDHIKLRSRI  120
EALQKSQRNL MGEQLDSLTL REVHHLEQQI DSALRNIRSR KVRFSSSDES SHRFRILLIF  180
LQESLLMEQN SILEKEKAEL EASMHKNGTA SSTEAAAPIC NAAVASLPIL NICSFTATES  240
ETRPSNRSGG DSGEPATAPF DRTSSDDGLL WWMLQPSSEV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-19173172MEF2C
5f28_B1e-19173172MEF2C
5f28_C1e-19173172MEF2C
5f28_D1e-19173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000006G0210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619865.21e-90MADS-box transcription factor 20
SwissprotQ2QQA39e-92MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A3Q8BS281e-126A0A3Q8BS28_DENLA; MADS20
STRINGOPUNC12G11630.14e-93(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-60AGAMOUS-like 8