PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01000004G1630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 22120.6 Da PI: 4.5942 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.6 | 5.3e-32 | 5 | 116 | 1 | 106 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppG+rF Pt+eel+++yL++k+++++ ++e+vi+ vd+y+v+Pw+Lp+ ++e + w++F++r++++a+g r++r+t sgyWka g+ PH01000004G1630 5 MPPGYRFYPTEEELICFYLRNKLDSRRDDIERVIPVVDVYSVDPWQLPEiherlcGGASEGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGT 98 79****************************99***************9646665433336779******************************* PP NAM 89 dkevlskkgelvglkktL 106 v+s+++ +g+kkt+ PH01000004G1630 99 PSVVYSAGRCPIGIKKTM 116 ******999********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-36 | 4 | 129 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.147 | 5 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-16 | 6 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MADGMPPGYR FYPTEEELIC FYLRNKLDSR RDDIERVIPV VDVYSVDPWQ LPEIHERLCG 60 GASEGEPWFY FCPRQEREAR GGRPSRTTPS GYWKAAGTPS VVYSAGRCPI GIKKTMLRSE 120 FSLCRLYTKS GSLRQFDRRP LAAAAGGAGE NPGPSTAAAS SPDDDDGSGG SMQQSQQQEQ 180 MEGGDGDPYG DDMATWAALL Y* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-20 | 4 | 123 | 14 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01000004G1630 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK071274 | 1e-108 | AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158560.1 | 9e-94 | NAC domain-containing protein 90-like | ||||
Swissprot | Q9FMR3 | 9e-49 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A3B6ELR4 | 4e-95 | A0A3B6ELR4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446NVB2 | 4e-95 | A0A446NVB2_TRITD; Uncharacterized protein | ||||
STRING | EMT13975 | 4e-93 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-51 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
---|---|---|---|
|