PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01000001G3420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 199aa MW: 21014.9 Da PI: 11.3573 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107 | 2.9e-33 | 55 | 146 | 7 | 105 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.....eaesssssasnsssgkaaksa 94 ++ h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a +c + a++ PH01000001G3420 55 GGKDQHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAvFSCssapsT--------T-----TASRLV 135 56999******************************************************988884444222211........1.....122222 PP TCP 95 akskksqksaa 105 k+ +++++a PH01000001G3420 136 GKRPRQDHEAP 146 22222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.9E-29 | 55 | 141 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 25.747 | 56 | 110 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042752 | Biological Process | regulation of circadian rhythm | ||||
GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MASRDAATFQ VHRPMAMPTP TPMSLPQPMT MPFTSVPADA VVPAPRKAGA GAAQGGKDQH 60 SKVNGRGRRV RMPIVCAARV FQLTRELGLK SDGQTIEWLL RQAEPSILAA TGSGTTPAVF 120 SCSSAPSTTT ASRLVGKRPR QDHEAPSFWE ALQPSRPVAW GLSPSQEAQA YASVAQGHHL 180 NLLSALSGAA RRPEESSR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00499 | DAP | Transfer from AT5G08330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01000001G3420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 1e-132 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 1e-132 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 1e-132 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-132 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855230 | 1e-132 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. | |||
GenBank | CT831719 | 1e-132 | CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635777.1 | 2e-92 | transcription factor TCP21 | ||||
TrEMBL | A0A3B6C9W3 | 4e-98 | A0A3B6C9W3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446MIR8 | 4e-98 | A0A446MIR8_TRITD; Uncharacterized protein | ||||
STRING | Traes_2BL_4B6057E06.1 | 6e-99 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 4e-36 | TCP family protein |