PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000001G0500

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 464aa MW: 51338.8 Da PI: 6.9588

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000001G0500	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.5	5.5e-31	68	152	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLi++r+em+ ++r++ lk+plW e+s+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea PH01000001G0500 68 RWPREETLALIRIRSEMDATFRDATLKGPLWVEISRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 152 8*******************************************************************866665..*****85 PP
2	trihelix	73.2	4.6e-23	266	332	1	68
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 rW+k ev+aLi++r +++ r+ ++ k+lWee+s+ mr+ g++rs+k+Ckekwen+nk++kk + ++ PH01000001G0500 266 RWPKTEVHALIQLRMDLDMRYPET-GPKGLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKQNPNR 332 8******************998.7899********************************87655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.7E-4	65	127	IPR001005	SANT/Myb domain
CDD	cd12203	6.34E-29	67	132	No hit	No description
Pfam	PF13837	1.3E-21	67	153	No hit	No description
PROSITE profile	PS50090	7.073	67	125	IPR017877	Myb-like domain
PROSITE profile	PS50090	7.677	259	322	IPR017877	Myb-like domain
SMART	SM00717	0.018	263	324	IPR001005	SANT/Myb domain
Pfam	PF13837	2.0E-15	265	330	No hit	No description
CDD	cd12203	3.51E-24	266	327	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence Send to blast
MGPFSLPPAP GPVPLSSRPP PTSQLQAQQQ HQHQTRPSYE ELAAVSGAGG FPDDDMQGGG 60 GSGSAGNRWP REETLALIRI RSEMDATFRD ATLKGPLWVE ISRKLAELGY KRSAKKCKEK 120 FENVHKYYKR TKEGRAGRQD GKSYRFFSQL EALHAATPQQ QQLPPASGNE SEDDDMTAET 180 GGCQERLGKR KLSGCGGGGG KKMMSFFEGL MKQVVARQEE MQRRFLETMD KREAERTARE 240 EAWRRQEVHV DTGLGGGEGG SASSSRWPKT EVHALIQLRM DLDMRYPETG PKGLWEEISA 300 GMRRLGYNRS SKRCKEKWEN INKYFKKQNP NRHEIEGKNI NDNDKRNNGG GGAGHVPTSN 360 GETTPTTAAF DVDSGMKKPE DIVRELSEQP PGEFTTDETD SDDMGDDYTN DGEEGEDDGK 420 MQYRIQFQRR NPGRTNNAPP PATASTTAVP TSTPSSTFLA MVQ*

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence Send to blast

MGPFSLPPAP GPVPLSSRPP PTSQLQAQQQ HQHQTRPSYE ELAAVSGAGG FPDDDMQGGG  60
GSGSAGNRWP REETLALIRI RSEMDATFRD ATLKGPLWVE ISRKLAELGY KRSAKKCKEK  120
FENVHKYYKR TKEGRAGRQD GKSYRFFSQL EALHAATPQQ QQLPPASGNE SEDDDMTAET  180
GGCQERLGKR KLSGCGGGGG KKMMSFFEGL MKQVVARQEE MQRRFLETMD KREAERTARE  240
EAWRRQEVHV DTGLGGGEGG SASSSRWPKT EVHALIQLRM DLDMRYPETG PKGLWEEISA  300
GMRRLGYNRS SKRCKEKWEN INKYFKKQNP NRHEIEGKNI NDNDKRNNGG GGAGHVPTSN  360
GETTPTTAAF DVDSGMKKPE DIVRELSEQP PGEFTTDETD SDDMGDDYTN DGEEGEDDGK  420
MQYRIQFQRR NPGRTNNAPP PATASTTAVP TSTPSSTFLA MVQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	KRSAKKCKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds specific DNA sequence such as GT3 box 5'-GGTAAA-3' in the SDD1 promoter. Negative regulator of water use efficiency (WUE) via the promotion of stomatal density and distribution by the transcription repression of SDD1. Regulates the expression of several cell cycle genes and endoreduplication, especially in trichomes where it prevents ploidy-dependent plant cell growth. {ECO:0000269\|PubMed:19717615, ECO:0000269\|PubMed:21169508}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000001G0500

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by water stress. {ECO:0000269\|PubMed:21169508}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107139	1e-137	AK107139.1 Oryza sativa Japonica Group cDNA clone:002-124-D01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637050.1	5e-88	trihelix transcription factor GTL1 isoform X2
Swissprot	Q9C882	8e-43	GTL1_ARATH; Trihelix transcription factor GTL1
TrEMBL	M0RWW8	1e-103	M0RWW8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P04100_001	1e-104	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	5e-42	GT-2-like 1

Publications ? help Back to Top
Caro E,Desvoyes B,Gutierrez C GTL1 keeps cell growth and nuclear ploidy under control. EMBO J., 2012. 31(24): p. 4483-5 [PMID:23188085] Zheng X, et al. The Wheat GT Factor TaGT2L1D Negatively Regulates Drought Tolerance and Plant Development. Sci Rep, 2016. 6: p. 27042 [PMID:27245096] Shibata M, et al. GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis. Development, 2018. [PMID:29439132]