PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000000G4410

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 308aa MW: 33062.8 Da PI: 8.7968

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000000G4410	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.1	2.7e-30	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt eLH +Fv+a+e +GG++kAtPk il+lm+vkgLt++hvkSHLQ+YR PH01000000G4410 19 PRLRWTAELHCSFVQAIECIGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRA 72 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-29	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.83	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	17	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.1E-23	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-6	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MGSSGRNGAV RQYIRSKVPR LRWTAELHCS FVQAIECIGG QDKATPKLIL QLMGVKGLTI 60 SHVKSHLQMY RATRHGTGMK EMQPQLHRKH SCAADGQGPK EFLCPPLKRT NMGTETTYKS 120 MQGSQGISEM RTTGTQYCID DYMQAMAMER RMKEEGLRWQ RDVAAADGTA AASKLQTVGC 180 LVQEADPFKG FALTAAFIGI GQMSKPEARH LGLVVKQQGP KENNGNVCFL FSSAARDGPD 240 GTPEQCSLSL SLGLDPKSSY AVASSPSESS CILSSSSRRS LSDCSGHSGC FVAPGVNLEL 300 SMSICGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	20	75	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000000G4410

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101849	0.0	AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634437.1	1e-130	putative Myb family transcription factor At1g14600
TrEMBL	A0A0D3FZ14	1e-129	A0A0D3FZ14_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZPD7	1e-129	A0A0D9ZPD7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H4H2	1e-129	A0A0E0H4H2_ORYNI; Uncharacterized protein
TrEMBL	I1PNX8	1e-129	I1PNX8_ORYGL; Uncharacterized protein
TrEMBL	Q7XUI6	1e-129	Q7XUI6_ORYSJ; OSJNBa0005N02.4 protein
STRING	OGLUM04G21960.1	1e-130	(Oryza glumipatula)
STRING	OS04T0566600-01	1e-130	(Oryza sativa)
STRING	ONIVA04G20480.1	1e-130	(Oryza nivara)
STRING	ORGLA04G0189700.1	1e-130	(Oryza glaberrima)
STRING	OBART04G21930.1	1e-130	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	8e-30	G2-like family protein