PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J02161.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 271aa    MW: 30581.1 Da    PI: 9.2892
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J02161.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1412703799
                    EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    +le++sg +++v++   k+sgr vl++GW++Fv+a+gLk  Df+ +k+dg s+  ++v +f+ 
  Pahal.J02161.1 12 RLESRSGHTFDVQV--AKNSGRLVLQSGWESFVSAHGLKMLDFLALKYDGISR--MKVLIFDP 70
                    699***********..*******************************988544..58888875 PP
2B347.92.4e-151772631198
                     HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++++ ++++ ++ e++    +   ++tl+   ++g+sW+v +     +++ +   l+kGW++F+++n+L++gD ++F+l + ++ +++v+v+r
  Pahal.J02161.1 177 GEHQHMRFSAEYSEAYlpF-I---KRTLM-LRRHGKSWDVMCHLqvpSGQCQFQKLGKGWRRFARDNNLQVGDLCLFELLK-TKYTMKVHVVR 263
                     4445566667777666532.2...23555.567*********776677777779999*********************988.77778998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.519171IPR003340B3 DNA binding domain
CDDcd100174.45E-12169No hitNo description
PfamPF023624.7E-121269IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-161382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-141376IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-18161263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-18161263IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.617167265IPR003340B3 DNA binding domain
CDDcd100172.27E-15169263No hitNo description
SMARTSM010193.3E-7170265IPR003340B3 DNA binding domain
PfamPF023621.9E-14171263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
RRLIPLIELK DRLESRSGHT FDVQVAKNSG RLVLQSGWES FVSAHGLKML DFLALKYDGI  60
SRMKVLIFDP SGCEKVPTCF VTKNTNNCRQ RKEESFDISS NSAKIANISS SSCSPSESSG  120
GSTSSEEHEA HSVPSYILPR GTSLTNVQNK KLEKKVQAIC SEIPIYGCVI KTTNISGEHQ  180
HMRFSAEYSE AYLPFIKRTL MLRRHGKSWD VMCHLQVPSG QCQFQKLGKG WRRFARDNNL  240
QVGDLCLFEL LKTKYTMKVH VVREFVENEI *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679253.11e-112putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A270R5N20.0A0A270R5N2_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ia01200.1.p1e-124(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.17e-09B3 family protein