PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 25309.5 Da PI: 9.4152 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.5 | 1.1e-18 | 26 | 156 | 26 | 118 |
NAM 26 kkleleevikevdiykvePwdLpk...........................................kvka..eek...ewyfFskrdkkyatgk 72 ++ ++i+evd+y++ePwdL+ + + + + ewyf s +d+ky++g+ Pahal.J01494.1 26 DD---LHIIQEVDLYRIEPWDLQGmhvvaslyvynykemkdrsehiinlhfyqsmqsnlsaerckqqQ--QhdD-EqaaEWYFLSYKDRKYPSGT 114 33...356**************94589***************************99999999876541..1332.1356**************** PP NAM 73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgek 118 r+nrat+ atg+dk+vls+ ++ +g++ktL+fykgrap+g++ Pahal.J01494.1 115 RSNRATA-----ATGRDKPVLSRsSRLIIGMRKTLIFYKGRAPNGKE 156 *****99.....9*********8444559***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-13 | 97 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVLFLAWSCS RTGPWELRLH NKTYGDDLHI IQEVDLYRIE PWDLQGMHVV ASLYVYNYKE 60 MKDRSEHIIN LHFYQSMQSN LSAERCKQQQ QHDDEQAAEW YFLSYKDRKY PSGTRSNRAT 120 AATGRDKPVL SRSSRLIIGM RKTLIFYKGR APNGKEDPLD QARVPPAAAT PPGGSRSGRL 180 LGGVPCLPLT IPSQQQPFFF PSRSSYFAAT TPAGGYVGGD GSSSS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448830.1 | 1e-34 | NAC domain-containing protein 30 | ||||
Refseq | XP_021318357.1 | 1e-34 | NAC domain-containing protein 30 | ||||
TrEMBL | A0A270R516 | 1e-168 | A0A270R516_9POAL; Uncharacterized protein | ||||
STRING | Sb06g034010.1 | 4e-34 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 5e-26 | vascular related NAC-domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01494.1 |