PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J01339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GeBP | ||||||||
Protein Properties | Length: 352aa MW: 37259.4 Da PI: 7.6444 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 39.1 | 2.1e-12 | 107 | 159 | 45 | 97 |
DUF573 45 isfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + +++ ql+eK+rrLK+K++ +++++ g +p+ ++hd+++++l++++W+ Pahal.J01339.1 107 MPQPYTRAQLSEKLRRLKNKYRSVSARVAGGLDPARLAPHDRDVLHLCSRLWD 159 6677899*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-14 | 81 | 159 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MASGQQALPV PAPVPPNPNP TAPADPTPPA GARKLPIKRR SPRPSSSPPS SSSPASSDPL 60 RAPAAGGGGA GSDQQQPPFK FQRIWSESDE LRFLQGLLGC GAQGLSMPQP YTRAQLSEKL 120 RRLKNKYRSV SARVAGGLDP ARLAPHDRDV LHLCSRLWDP ANAATSPFTS GGGASGNKRR 180 RANPRGTQLL APDASGDSNS HDYNGVSSSA PGLFPDVSNG EDVFYLEQES RHLGDHEGAT 240 LDSKFGVIVQ EQPEDVVALP NGNNGIGNEI GDHKVVVPCS NEHRMANAVL DVFEECLREA 300 KASGIINNGN VGGSAEESEL AKRWRVQRMD ELHVLSRRLR LLVEDAAAAG H* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791535.1 | 0.0 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A270R7B8 | 0.0 | A0A270R7B8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04304.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-08 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J01339.1 |