PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00687.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 272aa    MW: 28623.8 Da    PI: 9.094
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00687.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047121143123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  Cgk F +   L  H ++H
  Pahal.J00687.1 121 FRCAVCGKAFASYQALGGHKSSH 143
                     89**********99999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-4120143IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.23E-9120143No hitNo description
SMARTSM003550.11121143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679121148IPR007087Zinc finger, C2H2
PfamPF139122.9E-12121145IPR007087Zinc finger, C2H2
PROSITE patternPS000280123143IPR007087Zinc finger, C2H2
SuperFamilySSF576674.23E-9178205No hitNo description
SMARTSM003550.91183205IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-10183206IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995183205IPR007087Zinc finger, C2H2
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMPVVVQLWV GVALGQIDRR LLATTNAASK IELNFESHLL FHQRLLAMVA GLEALLDPTA  60
LSLALPAPPA LKKEDYLAIC LAALAGTRKY AGLGKEQHGT ARWCPAQRHA PPAPQQQELP  120
FRCAVCGKAF ASYQALGGHK SSHRKPPTEE QYAAATAQAA SSAGGLDETA PSGLGGASGA  180
GPHRCTICRR GFATGQALGG HKRCHYWDGM SVSGSVSASV SASGTGSSGV TVRNFDLNLA  240
PLPENFGVKR WGEEEEVQSP LPIKKRRILI D*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582288e-31AK358228.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796753.11e-163zinc finger protein 36-like
SwissprotQ75KE57e-71ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A2T8I4C50.0A0A2T8I4C5_9POAL; Uncharacterized protein
STRINGPavir.J12087.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-24salt tolerance zinc finger
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]