PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J00686.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 225aa    MW: 23349.4 Da    PI: 8.6924
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J00686.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000367698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C  Cgk F +   L  H ++H
  Pahal.J00686.1 76 FRCAVCGKAFASYQALGGHKSSH 98
                    89**********99999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-1275100IPR007087Zinc finger, C2H2
SMARTSM003550.117698IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.23E-87698No hitNo description
PROSITE profilePS5015710.67976103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SuperFamilySSF576678.23E-8132159No hitNo description
SMARTSM003550.91137159IPR015880Zinc finger, C2H2-like
PfamPF139126.0E-10137160IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAAGFEALLD PTALSLALPA PGLNKEDYIA ICLAALAGTR GTGLKAAGFG RHAEKWCPLP  60
LAAEPPSPVA QEELRFRCAV CGKAFASYQA LGGHKSSHRK PPTEQRYAAA AAARAAASTA  120
DSEETTSSGG PAAGGPHRCT ICRRGFATGQ ALGGHKRCHY WDGSSVSVSL SASASGSGTG  180
SSGFTVRNFD LNLMPLPENA GMRRWVEEEE VQSPLPIKKR RISD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0940702e-37FP094070.1 Phyllostachys edulis cDNA clone: bphyem106f16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797129.11e-162zinc finger protein 36-like
SwissprotQ75KE53e-79ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLA0A2S3IPI31e-161A0A2S3IPI3_9POAL; Uncharacterized protein
STRINGPavir.J37325.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-28salt tolerance zinc finger
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  4. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]