PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.J00111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 374aa MW: 40110.1 Da PI: 6.5492 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.6e-28 | 128 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK++ g++fpr+YYrCt++ gCp++k+v+rs++d v+++tY+geH+++ Pahal.J00111.1 128 DDGFSWRKYGQKDILGAKFPRGYYRCTYRaaqGCPATKQVQRSDTDLCVFDVTYQGEHTCH 188 8***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.7E-28 | 120 | 189 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.94 | 122 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-24 | 126 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-40 | 127 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 128 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010193 | Biological Process | response to ozone | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0042542 | Biological Process | response to hydrogen peroxide | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MLDGAGAEGG IQLLLTILAD GEEQARQLGE LAEDPRSRAE HYRGAARRLQ CTLGKAVAVA 60 KAVEAAPGSS RGTDRSDSPR SADESSGGTA AVEAPERQNL VCNKRRKGLP RWTAKFRVPD 120 ANLEATPDDG FSWRKYGQKD ILGAKFPRGY YRCTYRAAQG CPATKQVQRS DTDLCVFDVT 180 YQGEHTCHQR QRHAAAVTAH GGGGSQSPPP PSHHEQQDPS MQLVVMGFKD ALKVETEAPL 240 YHQDHDYYDH GPASAPAALP FSFPSVPFHH HHAGELEAPD NNPAAAAAAA FSPPGSSSYF 300 SAPPHHCPAV AGSYDVYDYE SPGARMRGAE SSELGEVVSR ATGLDYSSLY HHTELDPHLP 360 FPPFGGSSRG PYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-21 | 129 | 186 | 18 | 75 | Disease resistance protein RRS1 |
5w3x_D | 4e-21 | 129 | 186 | 18 | 75 | Disease resistance protein RRS1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811264.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A2S3HLN7 | 0.0 | A0A2S3HLN7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da02163.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13340 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 4e-39 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.J00111.1 |