PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04632.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 413aa MW: 44956.4 Da PI: 4.6558

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04632.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.2e-14	216	263	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h + ErrRR+++N+ f L++l+P+ +K++Ka+iL +++ Y+++L+ Pahal.I04632.2 216 KSHVMSERRRREKLNEMFLVLKSLIPST-----RKVDKASILAETIAYLRELE 263 6899*********************8.....8**************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.342	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.27E-18	214	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-15	216	267	No hit	No description
Pfam	PF00010	2.0E-11	216	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-18	217	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-16	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDGVLELGTT DSVLEDPDLA NRATTPFREL QFPACTEEPN SSPSVDETRE ASDIIVFEDV 60 DHNAAMEPMI SEGHERGKFF TTECLPDANF EEVTMEIDEL YNNFCEGLDV QLLEDDWISI 120 DGLLEAPPSL EPAPEAATDD GDGDHTLSKP VDGSRFLSSF KAWTRPESDR AAAPATAGAP 180 QKMLKKVVSG GAWWASNGGD ESTAWRTATQ ESGITKSHVM SERRRREKLN EMFLVLKSLI 240 PSTRKVDKAS ILAETIAYLR ELERRVQELE SSKELSTPRP AAGALRHHDA EVVGTRKAAS 300 GGAKRKKKGS ELDAGDRQME RHYVGSSGGP SNVSIAVADK EVLLDVQCRW KERLMARVFD 360 AVKSLHLNIV SVQSSTLDGL MGLKVRAQFA SSAAVAPGMI IEALQEAISS RT*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDGVLELGTT DSVLEDPDLA NRATTPFREL QFPACTEEPN SSPSVDETRE ASDIIVFEDV  60
DHNAAMEPMI SEGHERGKFF TTECLPDANF EEVTMEIDEL YNNFCEGLDV QLLEDDWISI  120
DGLLEAPPSL EPAPEAATDD GDGDHTLSKP VDGSRFLSSF KAWTRPESDR AAAPATAGAP  180
QKMLKKVVSG GAWWASNGGD ESTAWRTATQ ESGITKSHVM SERRRREKLN EMFLVLKSLI  240
PSTRKVDKAS ILAETIAYLR ELERRVQELE SSKELSTPRP AAGALRHHDA EVVGTRKAAS  300
GGAKRKKKGS ELDAGDRQME RHYVGSSGGP SNVSIAVADK EVLLDVQCRW KERLMARVFD  360
AVKSLHLNIV SVQSSTLDGL MGLKVRAQFA SSAAVAPGMI IEALQEAISS RT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	ERRRRE
2	222	227	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808676.1	0.0	anthocyanin regulatory R-S protein-like
Swissprot	P13027	3e-98	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	A0A2S3HEH6	0.0	A0A2S3HEH6_9POAL; Uncharacterized protein
STRING	Si000845m	1e-143	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	6e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.I04632.2

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]