PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04632.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 588aa    MW: 64338.3 Da    PI: 5.0506
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04632.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14391438355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h + ErrRR+++N+ f  L++l+P+      +K++Ka+iL +++ Y+++L+
  Pahal.I04632.1 391 KSHVMSERRRREKLNEMFLVLKSLIPST-----RKVDKASILAETIAYLRELE 438
                     6899***********************8.....8****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-4720201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.342388437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18389456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-15391442No hitNo description
PfamPF000103.2E-11391438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17392449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-16394443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAPSASPVQE EPQPGNEQFR NHLAAAVRSI SWVYAIFWSV SSTGPAGVLT WKDGFYNGDV  60
KTRKVTTSTS EMTADQLALQ RSEQLRELYD SLQLSGGDRH RARPPRPAAA LSPEDLGDTE  120
WFYVVCMTYA FRPGQGLPGK SLARNEHVWL RNAHLADSKT FPRALLAKTI VCIPLMDGVL  180
ELGTTDSVLE DPDLANRATT PFRELQFPAC TEEPNSSPSV DETREASDII VFEDVDHNAA  240
MEPMISEGHE RGKFFTTECL PDANFEEVTM EIDELYNNFC EGLDVQLLED DWISIDGLLE  300
APPSLEPAPE AATDDGDGDH TLSKPVDGSR FLSSFKAWTR PESDRAAAPA TAGAPQKMLK  360
KVVSGGAWWA SNGGDESTAW RTATQESGIT KSHVMSERRR REKLNEMFLV LKSLIPSTRK  420
VDKASILAET IAYLRELERR VQELESSKEL STPRPAAGAL RHHDAEVVGT RKAASGGAKR  480
KKKGSELDAG DRQMERHYVG SSGGPSNVSI AVADKEVLLD VQCRWKERLM ARVFDAVKSL  540
HLNIVSVQSS TLDGLMGLKV RAQFASSAAV APGMIIEALQ EAISSRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t0f_A4e-19111981188Transcription factor MYC3
5t0q_A4e-19111981188Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396401ERRRRE
2397402RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808676.10.0anthocyanin regulatory R-S protein-like
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLA0A2T7EH790.0A0A2T7EH79_9POAL; Uncharacterized protein
STRINGSi000845m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-56bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]