PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I04414.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 190aa MW: 21154.1 Da PI: 11.6164 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 37.3 | 7.4e-12 | 15 | 88 | 2 | 69 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegek 69 W++ e+ +Li+a ++r r + l+ ++W++ ++++ + + f+r+ +qC+ +++ l+kryk++ +++ Pahal.I04414.1 15 WSDGETSTLIDAWGGAHQRRRPRGLRLKDWRAAASAVnahraaAGHRFNRTRVQCQTRIRTLKKRYKEELARQP 88 *****************************************99999*********************9876655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-18 | 14 | 100 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MPSRKPAPEC ASGNWSDGET STLIDAWGGA HQRRRPRGLR LKDWRAAASA VNAHRAAAGH 60 RFNRTRVQCQ TRIRTLKKRY KEELARQPPS GWPHLPRLRA FLAGPDGPPP GFPARRRRPS 120 SWSGLAASWT VPRRPRDAAA RSTGFCTAAV VTKLAEVYER VELARIGAEE EKMEMEVQQA 180 MLDVVKVEQ* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792102.1 | 1e-108 | uncharacterized protein LOC112873338 | ||||
TrEMBL | A0A2S3ISL9 | 1e-111 | A0A2S3ISL9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J18525.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14753 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-08 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I04414.1 |