PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04258.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 345aa    MW: 38007.4 Da    PI: 6.051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04258.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.4e-5381401129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yL+kkv ++k++l +vi++vd+y++ePwdL++  k+   e+++wyfFs +d+ky+tg+r+nrat +g+Wkatg+dk+v
  Pahal.I04258.1   8 VPPGFRFHPTDEELVGYYLRKKVVSQKIDL-DVIRDVDLYHIEPWDLQEhcKIGYeEQSDWYFFSYKDRKYPTGTRTNRATLTGFWKATGRDKAV 101
                     69****************************.9***************953433332556************************************ PP

             NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      ++  +g l+g++ktLvfy+grap+g+ktdW+mheyrle
  Pahal.I04258.1 102 RDSkhGGGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 140
                     *98777888****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-594160IPR003441NAC domain
PROSITE profilePS5100559.2078160IPR003441NAC domain
PfamPF023654.6E-289139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVIMESCVPP GFRFHPTDEE LVGYYLRKKV VSQKIDLDVI RDVDLYHIEP WDLQEHCKIG  60
YEEQSDWYFF SYKDRKYPTG TRTNRATLTG FWKATGRDKA VRDSKHGGGL IGMRKTLVFY  120
TGRAPNGRKT DWIMHEYRLE TDENAAPKEE GWVVCRAFKK RTMHPPRSVA GAWDPSYPYY  180
PDPVLAGAAR FKQESPELDG GGAASAASAL LQYSSRLAEL PQLESPPLPN QGSHRASADG  240
EGDPAATTDW RALDRFVASQ LIPPDEDHGH AAGQGCLPQQ QEYCGKPLGA AHAGDSSDQD  300
ATDMVALLLL DGAARHEEAG LLGSVADPAC LHRNAARFGG HQEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-46516212170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750860.0KT075086.1 Panicum virgatum secondary wall NAC master switch (SWN4B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796895.10.0NAC domain-containing protein 105-like
SwissprotO655081e-104NAC76_ARATH; NAC domain-containing protein 76
TrEMBLA0A2S3IP750.0A0A2S3IP75_9POAL; Uncharacterized protein
STRINGPavir.Ia02924.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36253768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-104NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]