PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I04227.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25598.4 Da    PI: 10.071
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I04227.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.32.4e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaev +i+fs++gkl+e++s
  Pahal.I04227.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVGLIVFSPRGKLHEFAS 59
                    79***********************************************86 PP
2K-box68.91.6e-2377172398
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     + s+k+ ++++ ++ + ++  L +++e L++++R++lGe+Le++s++eL+ Le +Leksl  iR kK++ll +qi +l++ke+ l ++nk+Lr+k
  Pahal.I04227.1  77 NLSSKAIQQQNIQHVKADALSLANRLEALEKSKRKFLGENLEDCSVEELHGLEVKLEKSLHVIRGKKTQLLEQQIAKLKEKERTLLKDNKELREK 171
                     56777799*************************************************************************************98 PP

           K-box  98 l 98 
                      
  Pahal.I04227.1 172 Q 172
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.244161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-31386IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-30323IPR002100Transcription factor, MADS-box
CDDcd002651.68E-40379No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2484171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.11388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVGLIVFSP RGKLHEFASA  60
ASLQKTIDRY KSYTRENLSS KAIQQQNIQH VKADALSLAN RLEALEKSKR KFLGENLEDC  120
SVEELHGLEV KLEKSLHVIR GKKTQLLEQQ IAKLKEKERT LLKDNKELRE KQRDVQPPLV  180
APAVTRCLPP WSRNLPVPCN DDVDVETELY IGLPGRERSA NRDSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-16173172MEF2C
5f28_B2e-16173172MEF2C
5f28_C2e-16173172MEF2C
5f28_D2e-16173172MEF2C
6byy_A2e-16174173MEF2 CHIMERA
6byy_B2e-16174173MEF2 CHIMERA
6byy_C2e-16174173MEF2 CHIMERA
6byy_D2e-16174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796199.11e-164MADS-box transcription factor 56-like
SwissprotA2Z9Q71e-105MAD56_ORYSI; MADS-box transcription factor 56
TrEMBLA0A2S3IP431e-163A0A2S3IP43_9POAL; Uncharacterized protein
STRINGSb01g030570.11e-135(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-71AGAMOUS-like 20