PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I04059.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 370aa MW: 38178.2 Da PI: 7.7175

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I04059.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.8	6.1e-18	264	299	1	36
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ Pahal.I04059.1 264 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 299 ********************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.3E-16	258	308	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-13	262	296	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.227	262	294	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.55E-14	262	322	No hit	No description
CDD	cd00202	3.26E-13	263	310	No hit	No description
PROSITE pattern	PS00344	0	264	289	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.3E-15	264	299	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009416	Biological Process	response to light stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MASEWEMAMG VELGMGMGTY HGHHHNASSI TTAPMSSHHS GAASFSTPHH HHYYGMPPVG 60 DAMRVDELLD LSTGAGAHDF FPTAAAAAAT DNGHHSGAMG EPSPTANSSD HQTSLLSFAD 120 EFYIPSEEAA ELEWLSKFVD DSYSDMPNYS SAAHAAMAAA AAANAAGNGG GNSVGQDSCV 180 TAAPGRGARS KRSRATAAAA AAWHSLVPRP PSQSSPSSSC SSSDFPSSNK PGRPNGANGS 240 RGKKSPGPGG AAPEVGMEGG VRRCTHCASE KTPQWRTGPL GPKTLCNACG VRFKSGRLMP 300 EYRPAASPTF VLTQHSNSHR KVMELRRQKE LILIRGSHRD AAAAAAAASA AAGSAGPRPE 360 LMFRDYGVC*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MASEWEMAMG VELGMGMGTY HGHHHNASSI TTAPMSSHHS GAASFSTPHH HHYYGMPPVG  60
DAMRVDELLD LSTGAGAHDF FPTAAAAAAT DNGHHSGAMG EPSPTANSSD HQTSLLSFAD  120
EFYIPSEEAA ELEWLSKFVD DSYSDMPNYS SAAHAAMAAA AAANAAGNGG GNSVGQDSCV  180
TAAPGRGARS KRSRATAAAA AAWHSLVPRP PSQSSPSSSC SSSDFPSSNK PGRPNGANGS  240
RGKKSPGPGG AAPEVGMEGG VRRCTHCASE KTPQWRTGPL GPKTLCNACG VRFKSGRLMP  300
EYRPAASPTF VLTQHSNSHR KVMELRRQKE LILIRGSHRD AAAAAAAASA AAGSAGPRPE  360
LMFRDYGVC*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068804	0.0	BT068804.1 Zea mays full-length cDNA clone ZM_BFb0383N16 mRNA, complete cds.
GenBank	BT087798	0.0	BT087798.1 Zea mays full-length cDNA clone ZM_BFb0206G21 mRNA, complete cds.
GenBank	EU956206	0.0	EU956206.1 Zea mays clone 1559028 GATA transcription factor 9 mRNA, complete cds.
GenBank	KJ726957	0.0	KJ726957.1 Zea mays clone pUT3655 C2C2-GATA transcription factor (GATA28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795835.1	0.0	GATA transcription factor 2-like
Swissprot	O49741	1e-59	GATA2_ARATH; GATA transcription factor 2
TrEMBL	A0A2S3INR4	0.0	A0A2S3INR4_9POAL; GATA transcription factor
TrEMBL	A0A2T7C9Z2	0.0	A0A2T7C9Z2_9POAL; GATA transcription factor
STRING	Si036273m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4621	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45050.1	7e-46	GATA transcription factor 2

Link Out ? help Back to Top
Phytozome	Pahal.I04059.1

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]