PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03793.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 872aa    MW: 93462.7 Da    PI: 5.9737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03793.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20135190156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Pahal.I03793.2 135 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 190
                     688999***********************************************998 PP
2START134.61.1e-423545892206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.................dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                     la +aa+ l k+  a+ep+Wv+ +    + ev+   e ++                   ++e +r+s+vv+m++ +lv  +ld + +W e ++  
  Pahal.I03793.2 354 LAATAADTLAKMCRAGEPLWVRCR--GASSEVMVADEHAQMfswpvdggkqgggsaaaARTEGSRDSAVVIMNSITLVDAFLDAN-KWMELFPsi 445
                     5789999*****************..55555555554555568888899999*********************************.********* PP

                     ..EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECT CS
           START  78 ..kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksn 159
                       ka t++vi+ g        g l+lm+ae q++splvp R++vf R++    ++g+w +vd   +  q     +ssvv+++++pSg++i++++n
  Pahal.I03793.2 446 vsKARTIQVINHGaasghlgsGSLVLMQAEVQFPSPLVPaREVVFFRHCVHnAEEGTWSVVDFPAEGFQLEALqTSSVVKCRRRPSGCIIQDMPN 540
                     ***************************************************99*********888888877779********************* PP

                     CEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 160 ghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                     g+s+v+wveh+++ g     h++++  v +g+a+ga +wv+ lqrqce+
  Pahal.I03793.2 541 GYSRVVWVEHMEMVGEEKplHQVFKDYVAKGTAFGATRWVSLLQRQCER 589
                     ************98765449***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-21124186IPR009057Homeodomain-like
SuperFamilySSF466892.3E-19126193IPR009057Homeodomain-like
PROSITE profilePS5007117.07132192IPR001356Homeobox domain
SMARTSM003891.1E-19133196IPR001356Homeobox domain
CDDcd000866.85E-19135193No hitNo description
PfamPF000463.7E-18135190IPR001356Homeobox domain
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PROSITE profilePS5084844.353344592IPR002913START domain
SuperFamilySSF559611.51E-29347591No hitNo description
SMARTSM002349.0E-20353589IPR002913START domain
PfamPF018524.3E-35354589IPR002913START domain
CDDcd088752.91E-97364588No hitNo description
SuperFamilySSF559611.09E-15614850No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAGASSS ADALFIPNPG ALAGFMSSSA AAMPFHHFTT TTASLIPKEE  60
GGIMGALQAA KDEDMELEMD MELSGGSGSG HLDGLLSFAD VDDDRPEQKP QHSGLELQTV  120
DAAGNQQLAT NNGKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF  180
WFQNRRTQMK AQQDRADNVL LRAENESLKS ENYRLQAAIR NVVCPNCGHA AVLGEMSYEE  240
QQLRIENARL KDELDRLACM ATRYGGGRQP SMSSALGCLS APPPLLMPPL DLDMSVYSRH  300
FTDQSSVMGC GDLIQSVLAP PQQIAGGAEH HAASSYMGSM APVPEQDRQL VLDLAATAAD  360
TLAKMCRAGE PLWVRCRGAS SEVMVADEHA QMFSWPVDGG KQGGGSAAAA RTEGSRDSAV  420
VIMNSITLVD AFLDANKWME LFPSIVSKAR TIQVINHGAA SGHLGSGSLV LMQAEVQFPS  480
PLVPAREVVF FRHCVHNAEE GTWSVVDFPA EGFQLEALQT SSVVKCRRRP SGCIIQDMPN  540
GYSRVVWVEH MEMVGEEKPL HQVFKDYVAK GTAFGATRWV SLLQRQCERL ASELARNIAD  600
LGVIRTPEAR TNMMKLSQRM ITTFCANISA SGSQSWTSLS ESTEDTIRVT TRKNTDPGQP  660
SGVILTAVST SWLPFSHQRV FELLADEQQR CQLEILSNGG SLHEVAHIAN GSHPRNCISL  720
LRINAASNSS QNVELLLQES STHPNGGSLV VFATVDVDAI QVTMSGEDPS YIPLLPLGFA  780
IFPATNPLPA ATSASSGNGE SSPGKPDEPA SGCLLTVGMQ VLASAVPSAK LNLSSVTAIN  840
SHVCNAIHQI TTALKGAGAS RAEPAAAGGS D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398404GGKQGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509860.0AJ250986.2 Zea mays mRNA for OCL4 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798256.10.0homeobox-leucine zipper protein ROC3
RefseqXP_025798257.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2S3IND90.0A0A2S3IND9_9POAL; Uncharacterized protein
STRINGPavir.J05371.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7