PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03687.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 302aa    MW: 32735.9 Da    PI: 5.6257
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03687.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.42e-11134179454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er+RR+++ + f++L +++P       +K +K+++L  ++eY+++L
  Pahal.I03687.1 134 EHVIAERKRREKMHHQFATLASIIPDI-----TKTDKVSVLGSTIEYLHYL 179
                     5999**********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14134193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-9134179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-11135184No hitNo description
SuperFamilySSF474595.76E-15135194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-13136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.178233301IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MESSASQWLA ELENDDVGGM EFIDPLSMQQ LAESLANELW NEPPQEQQQE QHDQPRQCIP  60
SPTGFSLLGN LNLINNADGS CPIVVGAGGS DNDMFSFTAG SPVATGSTVG KCCSSSTTEK  120
KCSGGRKPSS SVKEHVIAER KRREKMHHQF ATLASIIPDI TKTDKVSVLG STIEYLHYLR  180
NRLKTLQETK HQHSSSRTAE SPTTLNARCC IASEDEGAAS PKIEADVQGT TVLLRVVCRE  240
KKGVLIMVLA ELEKHRLSII NTNVVPFAES SLNITITAQI EDGSSTIVEL VNNLNSALKR  300
F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRE
2139144RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791935.10.0transcription factor bHLH19-like
TrEMBLA0A2T8I3P50.0A0A2T8I3P5_9POAL; Uncharacterized protein
STRINGPavir.Ib02673.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-29bHLH family protein