PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03684.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 314aa    MW: 34505.6 Da    PI: 4.829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03684.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10148193555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h  +ErrRR+++   f++L +++P       +K +K++ L  +++Y+++L+
  Pahal.I03684.1 148 HVLVERRRREKMHLQFATLASIIPDT-----TKRDKVSLLGSTIDYVHHLR 193
                     8899*********************9.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.64E-10136197No hitNo description
PROSITE profilePS5088813.795143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-13147203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-8148192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13148205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.537244313IPR002912ACT domain
CDDcd021160.00197245301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MNSSANHQWL EELENEDLGE LDFIDLLSMQ QLAESLADEL WDQPTQEQQV QLDLDQRQQP  60
MYPTGFSFLG DIRKSYAEGF PTTMAISAGG GDSVFSFTDG KSKQLSFSSP EPKQDGDAST  120
TAGKFGARSP ATMESKGRRR ASSSVHEHVL VERRRREKMH LQFATLASII PDTTKRDKVS  180
LLGSTIDYVH HLRGRLKALQ DEQFQSTGST AESPPLDARC CIGSEDDGEA SQKIEADVRG  240
TTVLLRVVCR EKKGVLIMVL KELEKHGLSI TSTNVLPLAD QSLLNITVTA QIEDGSSTAV  300
EFVNNLNSAL RNF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137155RRRASSSVHEHVLVERRRR
2151156ERRRRE
3152157RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796991.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A2S3IN390.0A0A2S3IN39_9POAL; Uncharacterized protein
STRINGPavir.Ib02672.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.19e-15bHLH family protein