PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03664.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 285aa MW: 31962.7 Da PI: 7.6435

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03664.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.3	1.4e-14	143	226	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +fY++Y k + Fs+r+++++k+ ++++vCs+ g +e++ + + +++++ +r+gC a +kvk++k ++ w+ +++++ H H+l p Pahal.I03664.1 143 DFYKDYCKIARFSLRTDRTSKE-------TSHWVCSRRGWHESKAGE-VPNKTEKGLKRCGCPAYVKVKEDKkRKLWYFDHVQEAHDHKLEP 226 6*************998877.......5799******9999.9*****************99999************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-10	143	226	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAPPLLIQHG SPLPPAIPPD FHALVRVVVL QGNLLTGGSQ SEVGGKPTPP PRMSSTLVLP 60 PMTTPTAIPA PAASADVPWR ILDEDEFADP LHHTTPLTPP TTVPPGALQT PDAAQIIYPD 120 SNIAPVFVLG VRQVFPTMND AYDFYKDYCK IARFSLRTDR TSKETSHWVC SRRGWHESKA 180 GEVPNKTEKG LKRCGCPAYV KVKEDKKRKL WYFDHVQEAH DHKLEPSPRM TRYMHAHKNM 240 EEVMCDIFNI MTRNWVAHQA ALNVMADLYD GRHMECKANN EYFY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791929.1	1e-110	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3L6RHU1	1e-106	A0A3L6RHU1_PANMI; Protein FAR1-RELATED SEQUENCE 11-like
STRING	Pavir.Fb02178.1.p	6e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP41237	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-08	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Pahal.I03664.1