PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I03412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 31717.4 Da PI: 7.5023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 109 | 159 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrdp+ r r++lg+f ta+ Aa+a++ a+++l+g+ Pahal.I03412.1 109 KYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFPTADSAARAYDGAARRLRGA 159 8********.**********63....56*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 108 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 109 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.579 | 109 | 166 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 109 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-37 | 109 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.05E-29 | 109 | 168 | No hit | No description |
PRINTS | PR00367 | 4.6E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MCGGAIIADL IPVAKPDRRS PVSHPWPAKN KRPWSGHGDD DFEAAFEEFD GDSEEDAFEM 60 DDIDNDAVKE EVLAPFGFRP LSPLFPHGRH GKNTSRLEAK RRAGRGARKY RGVRQRPWGK 120 WAAEIRDPVR GVRVWLGTFP TADSAARAYD GAARRLRGAK AKLNFPSSPP PDRKRRRRAS 180 ANANASAVIT HCPPTVSYAA AAPGVVREPG GAKKPPANGE ATQALPLPPS AVCASYDGQE 240 AFDSYDLYGE LASYFSCDGA FEPLESMLTG SVAAVEHGTM SLWSFGDDSS LCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 172 | 176 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791795.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2T7C7U0 | 0.0 | A0A2T7C7U0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02796.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15195 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-11 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I03412.1 |