PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03350.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 400aa MW: 44537.6 Da PI: 4.9063

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03350.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.4	4.1e-17	22	131	10	128
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevlskkgelvglk 103 +deelv ++L+++ ++++l+ +v+ +d v+P+ + + wy + d++ + + +++ r++k+gyWk+ + +v + + +g+k Pahal.I03350.1 22 SDEELV-RFLAERKAEDPLPQ-DVLVGLDFSLVDPRIFT------VDLWYLCWSDDQQPNnSAENSIRKAKNGYWKHVESC-KVPT-SIGIMGMK 106 79**.99999999999999.99********996......34576444444333314556678999*98775.5555.5778 PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 +L fy+g+ap g++t Wvmhey++ Pahal.I03350.1 107 IILQFYEGHAPCGKRTGWVMHEYQV 131 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-25	12	152	IPR003441	NAC domain
PROSITE profile	PS51005	26.33	13	152	IPR003441	NAC domain
Pfam	PF02365	1.0E-11	22	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MCPPNPELKL AALNISIRDS WSDEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD 60 LWYLCWSDDQ QPNNSAENSI RKAKNGYWKH VESCKVPTSI GIMGMKIILQ FYEGHAPCGK 120 RTGWVMHEYQ VEQNDEANLP QDYKSLCRVF FQGDKKLDDK SQQNSLNVDA PNDRLETYLQ 180 YLAKLEEPKV TADANEEDVC SSKVQFEQKP LSALDDIDVI ATGDYIELND LLTSEASAST 240 SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGLNQDHKF SIAAPTKSAN VVLSPSEQGS 300 MVLLLSCNLR GLVQFHDNNG MVPGTSHQKP VPEGDRGEHS RQGFQQQGPS MSSYFPSSHV 360 KPSHSNSSSS SQSSMKSHKE QSTSKFGMIG KKYCCFGSF*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MCPPNPELKL AALNISIRDS WSDEELVRFL AERKAEDPLP QDVLVGLDFS LVDPRIFTVD  60
LWYLCWSDDQ QPNNSAENSI RKAKNGYWKH VESCKVPTSI GIMGMKIILQ FYEGHAPCGK  120
RTGWVMHEYQ VEQNDEANLP QDYKSLCRVF FQGDKKLDDK SQQNSLNVDA PNDRLETYLQ  180
YLAKLEEPKV TADANEEDVC SSKVQFEQKP LSALDDIDVI ATGDYIELND LLTSEASAST  240
SENSSKRSMV SEDYFDSDAF LREILKGSNT TDGLNQDHKF SIAAPTKSAN VVLSPSEQGS  300
MVLLLSCNLR GLVQFHDNNG MVPGTSHQKP VPEGDRGEHS RQGFQQQGPS MSSYFPSSHV  360
KPSHSNSSSS SQSSMKSHKE QSTSKFGMIG KKYCCFGSF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797453.1	0.0	NAC domain-containing protein 76-like isoform X1
Refseq	XP_025797456.1	0.0	NAC domain containing protein 52-like isoform X4
Refseq	XP_025797457.1	0.0	NAC domain containing protein 52-like isoform X4
TrEMBL	A0A2T7C834	0.0	A0A2T7C834_9POAL; Uncharacterized protein
STRING	Pavir.Ib03017.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	4e-16	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	Pahal.I03350.1