PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03152.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 551aa    MW: 58591.1 Da    PI: 10.6658
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03152.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.82e-15107141135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cgt  Tp+ R+gp+g +tLCnaCG++yr+ +l
  Pahal.I03152.1 107 CRHCGTNRTPQRREGPEGRSTLCNACGVRYRSGRL 141
                     *******************************9885 PP
2GATA56.92.8e-18474508135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cgt +Tp+WR+gp+g  tLCnaCG++y++ +l
  Pahal.I03152.1 474 CRHCGTENTPQWREGPEGRHTLCNACGVRYKSGRL 508
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011410.277101137IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-9101151IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11103164No hitNo description
CDDcd002024.83E-11106155No hitNo description
Gene3DG3DSA:3.30.50.101.0E-10106138IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.3E-13107141IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-14467527No hitNo description
PROSITE profilePS5011412.861468504IPR000679Zinc finger, GATA-type
SMARTSM004014.3E-17468518IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-15472506IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.34E-14473523No hitNo description
PROSITE patternPS003440474499IPR000679Zinc finger, GATA-type
PfamPF003202.7E-16474508IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MVVVDALHLH GDSAAAVADD LFGGGADLHG FFDHMALEVK ASGGGGDEGE EELEWLSNKD  60
AFPTVETMGP SAPRPRTKGV RRPRREVAWS PPQAPAVGRA PPAGWRCRHC GTNRTPQRRE  120
GPEGRSTLCN ACGVRYRSGR LVPEYRPASS PTFSPELHSN RHRLVVEMRR RREEAAQALL  180
AAARNGEGKG DEKLECLSQK GEFLAVQLMA AAAAGPRTEG KRRPRKAVEW PAIAWSPPPP  240
PRVPAVAGRR PSQGGAGLAV EQGRVPVGGD DDVGGCAAAD QGRAAVPADG GLNPAAPLAA  300
AAAAGRPCQQ CGTEKTPQWL VGYRSSCMVP VLPVRPELRF VWHNRVKLHR RPERMAKFCP  360
ATAADGEEGK EEMGWPSNND AFPAMKAVPT AAARPQTKGV RRRRVVELSP PRTPPPPRRR  420
SRRGGQEAAV EQGRVGDGGA AADKGRAAAP AGGGEVAAAR AAAPRAPAAT RRQCRHCGTE  480
NTPQWREGPE GRHTLCNACG VRYKSGRLVP EYRPASSPTF SPGLHSNCHQ QVVQLRRRRE  540
GSAAAAPGDK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796227.10.0uncharacterized protein LOC112876348
TrEMBLA0A2S3IM840.0A0A2S3IM84_9POAL; Uncharacterized protein
STRINGPavir.Ia04743.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2765644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.15e-29GATA transcription factor 6